Combed single DNA molecules imaged by secondary ion mass spectrometry

Studies of replication, recombination, and rearrangements at the level of individual molecules of DNA are often limited by problems of resolution or of perturbations caused by the modifications that are needed for imaging. The Combing-Imaging by Secondary Ion Mass Spectrometry (SIMS) (CIS) method helps solve these problems by combining DNA combing, cesium flooding, and quantitative imaging via the NanoSIMS 50. We show here that CIS can reveal, on the 50 nm scale, individual DNA fibers labeled with different, nonradioactive isotopes and, moreover, that it can quantify these isotopes so as to detect and measure the length of one or more short nucleic acid fragments associated with a longer fiber.     

Solubility and electrochemical studies of LiFeO2–LiCoO2–NiO materials for the MCFC cathode application

The dissolution of the state-of-the-art lithiated NiO is still considered as one of the main obstacles to the commercialisation of the molten carbonate fuel cell (MCFC). Development of alternative cathode materials has been considered as a main strategy for solving this problem. Ternary compositions of LiFeO₂, LiCoO₂ and NiO are expected to decrease the cathode solubility while ensuring a good electrical conductivity and electrochemical activity towards the oxygen reduction.

In this work, new material compositions in the LiFeO₂–LiCoO₂–NiO ternary system were synthesised using Pechini method and investigating their electrical conductivity by the DC four probe method. Then the influence of the cobalt content in the composition was determined in terms of AC impedance analysis and solubility measurements after 200 h of immersion in Li₂CO₃–Na₂CO₃ at 650 °C. The DC electrical conductivity study reveals the ability of improving the electrical conductivity, adequate for MCFC cathode application, by controlling the Co content of the composition. A special attention was given to the evolution of the open circuit potential as a function of time and to the impedance spectroscopy characterization related to microstructure modifications. Taking into account solubility, electrical conductivity, as well as electrochemical performance in the fuel cell, this study reveals the possibility of using LiFeO₂–LiCoO₂–NiO ternary materials for MCFC cathode.     

A generic cognitive framework for supervising the radio dynamic reconfiguration

Cognitive radio is a technological concept pushing for the introduction of intelligent radio operation that goes beyond traditional system adaptation. So far, a rather limited amount of work has been published on the cognitive mechanisms that should be embedded into communicating equipments to achieve such an intelligent behavior. This paper presents a generic cognitive framework for autonomous decision making with regard to multiple, possibly conflicting, operational objectives in a time-varying environment. The framework is based on the definition of two scales introducing order relationships between the configurations that help the reasoning and learning processes. The resulting cognitive engine learns to progressively identify the optimal configurations for the design objectives imposed given the current radio environment. The proposed approach is illustrated for a case of cognitive waveform design and extensive simulation results validate the cognitive engine behavior.     

On the cathodic reduction of α-substituted indan 1-ones in the presence or in the absence of oxygen. Mixed hydroxylation and coupling into stereospecific tetraols

It appears that indan 1-ones may have a rather unforeseen cathodic behaviour when substituted in α-position by a hydroxy group, with formation of a stereospecific tetraol by coupling. Such a dimer was also obtained by means of a one-step mixed electrolysis of the corresponding indanones in the presence of oxygen. This unexpected reactivity of indanones is discussed as a function of the nature of different substituents adjacent to the carbonyl group.     

Removal of MS2, Qβ and GA bacteriophages during drinking water treatment at pilot scale

The removal of MS2, Qβ and GA, F-specific RNA bacteriophages, potential surrogates for pathogenic waterborne viruses, was investigated during a conventional drinking water treatment at pilot scale by using river water, artificially and independently spiked with these bacteriophages. The objective of this work is to develop a standard system for assessing the effectiveness of drinking water plants with respect to the removal of MS2, Qβ and GA bacteriophages by a conventional pre-treatment process (coagulation-flocculation-settling-sand filtration) followed or not by an ultrafiltration (UF) membrane (complete treatment process). The specific performances of three UF membranes alone were assessed by using (i) pre-treated water and (ii) 0.1 mM sterile phosphate buffer solution (PBS), spiked with bacteriophages. These UF membranes tested in this work were designed for drinking water treatment market and were also selected for research purpose.The hypothesis serving as base for this study was that the interfacial properties for these three bacteriophages, in terms of electrostatic charge and the degree of hydrophobicity, could induce variations in the removal performances achieved by drinking water treatments.The comparison of the results showed a similar behaviour for both MS2 and Qβ surrogates whereas it was particularly atypical for the GA surrogate. The infectious character of MS2 and Qβ bacteriophages was mostly removed after clarification followed by sand filtration processes (more than a 4.8-log reduction) while genomic copies were removed at more than a 4.0-log after the complete treatment process. On the contrary, GA bacteriophage was only slightly removed by clarification followed by sand filtration, with less than1.7-log and 1.2-log reduction, respectively. After the complete treatment process achieved, GA bacteriophage was removed with less than 2.2-log and 1.6-log reduction, respectively.The effectiveness of the three UF membranes tested in terms of bacteriophages removal showed significant differences, especially for GA bacteriophage. These results could provide recommendations for drinking water suppliers in terms of selection criteria for membranes.MS2 bacteriophage is widely used as a surrogate for pathogenic waterborne viruses in Europe and the United States. In this study, the choice of MS2 bacteriophage as the best surrogate to be used for assessment of the effectiveness of drinking water treatment in removal of pathogenic waterborne viruses in worst conditions is clearly challenged. It was shown that GA bacteriophage is potentially a better surrogate as a worst case than MS2. Considering GA bacteriophage as the best surrogate in this study, a chlorine disinfection step could guaranteed a complete removal of this model and ensure the safety character of drinking water plants.     

In vitro assessment of the pulmonary toxicity and gastric availability of lead-rich particles from a lead recycling plant

Epidemiological studies in urban areas have linked increasing respiratory and cardiovascular pathologies with atmospheric particulate matter (PM) from anthropic activities. However, the biological fate of metal-rich PM industrial emissions in urban areas of developed countries remains understudied. Lead toxicity and bioaccessibility assessments were therefore performed on emissions from a lead recycling plant, using complementary chemical acellular tests and toxicological assays, as a function of PM size (PM(10-2.5), PM(2.5-1) and PM(1)) and origin (furnace, refining and channeled emissions). Process PM displayed differences in metal content, granulometry, and percentage of inhalable fraction as a function of their origin. Lead gastric bioaccessibility was relatively low (maximum 25%) versus previous studies; although, because of high total lead concentrations, significant metal quantities were solubilized in simulated gastrointestinal fluids. Regardless of origin, the finest PM(1) particles induced the most significant pro-inflammatory response in human bronchial epithelial cells. Moreover, this biological response correlated with pro-oxidant potential assay results, suggesting some biological predictive value for acellular tests. Pulmonary effects from lead-rich PM could be driven by thiol complexation with either lead ions or directly on the particulate surface. Finally, health concern of PM was discussed on the basis of pro-inflammatory effects, accellular test results, and PM size distribution.     

Acute exposure to silica nanoparticles enhances mortality and increases lung permeability in a mouse model of Pseudomonas aeruginosa pneumonia

Background

The lung epithelium constitutes the first barrier against invading pathogens and also a major surface potentially exposed to nanoparticles. In order to ensure and preserve lung epithelial barrier function, the alveolar compartment possesses local defence mechanisms that are able to control bacterial infection. For instance, alveolar macrophages are professional phagocytic cells that engulf bacteria and environmental contaminants (including nanoparticles) and secrete pro-inflammatory cytokines to effectively eliminate the invading bacteria/contaminants. The consequences of nanoparticle exposure in the context of lung infection have not been studied in detail. Previous reports have shown that sequential lung exposure to nanoparticles and bacteria may impair bacterial clearance resulting in increased lung bacterial loads, associated with a reduction in the phagocytic capacity of alveolar macrophages.

Results

Here we have studied the consequences of SiO₂ nanoparticle exposure on Pseudomonas aeruginosa clearance, Pseudomonas aeruginosa-induced inflammation and lung injury in a mouse model of acute pneumonia. We observed that pre-exposure to SiO₂ nanoparticles increased mice susceptibility to lethal pneumonia but did not modify lung clearance of a bioluminescent Pseudomonas aeruginosa strain. Furthermore, internalisation of SiO₂ nanoparticles by primary alveolar macrophages did not reduce the capacity of the cells to clear Pseudomonas aeruginosa. In our murine model, SiO₂ nanoparticle pre-exposure preferentially enhanced Pseudomonas aeruginosa-induced lung permeability (the latter assessed by the measurement of alveolar albumin and IgM concentrations) rather than contributing to Pseudomonas aeruginosa-induced lung inflammation (as measured by leukocyte recruitment and cytokine concentration in the alveolar compartment).

Conclusions

We show that pre-exposure to SiO₂ nanoparticles increases mice susceptibility to lethal pneumonia but independently of macrophage phagocytic function. The deleterious effects of SiO₂ nanoparticle exposure during Pseudomonas aeruginosa-induced pneumonia are related to alterations of the alveolar-capillary barrier rather than to modulation of the inflammatory responses.

Electronic supplementary material

The online version of this article (doi:10.1186/s12989-014-0078-9) contains supplementary material, which is available to authorized users.     

Local robust and asymptotically unbiased estimation of conditional Pareto-type tails

We introduce a non-parametric robust and asymptotically unbiased estimator for the tail index of a conditional Pareto-type response distribution in presence of random covariates. The estimator is obtained from local fits of the extended Pareto distribution to the relative excesses over a high threshold using an adjusted minimum density power divergence estimation technique. We derive the asymptotic properties of the proposed estimator under some mild regularity conditions, and also investigate its finite sample performance with a small simulation experiment. The practical applicability of the methodology is illustrated on a dataset of calcium content measurements of soil samples.