Fusing two cytochromes b of Rhodobacter capsulatus cytochrome bc1 using various linkers defines a set of protein templates for asymmetric mutagenesis

Cytochrome bc(1) (mitochondrial complex III), one of the key enzymes of biological energy conversion, is a functional homodimer in which each monomer contains three catalytic subunits: cytochrome c(1), the iron-sulfur subunit and cytochrome b. The latter is composed of eight transmembrane α-helices which, in duplicate, form a hydrophobic core of a dimer. We show that two cytochromes b can be fused into one 16-helical subunit using a number of different peptide linkers that vary in length but all connect the C-terminus of one cytochrome with the N-terminus of the other. The fusion proteins replace two cytochromes b in the dimer defining a set of available protein templates for introducing mutations that allow breaking symmetry of a dimer. A more detailed comparison of the form with the shortest, 3 amino acid, linker to the form with 12 amino acid linker established that both forms display similar level of structural plasticity to accommodate several, but not all, asymmetric patterns of mutations that knock out individual segments of cofactor chains. While the system based on a fused gene does not allow for the assessments of the functionality of electron-transfer paths in vivo, the family of proteins with fused cytochrome b offers attractive model for detailed investigations of molecular mechanism of catalysis at in vitro/reconstitution level.     

Microencapsulation in foam spray drying

Abstract

The article presents the results of the experiments of gas-admixing foam spray drying microencapsulation of oil in co-current spray drying tower. The introduction of a foaming gas resulted in a decrease of encapsulation efficiency: for high foaming gas/liquid ratio (GLR) 6.43·10^?3 kg/kg and T_air,0=215?°C by over 50% relative to the non-foaming process due to damage of the microcapsule structure and leakage of the oil phase to the particle surface. For moderate drying temperatures and GLR, 80% of microencapsulation efficiency might be achieved with simultaneous control of selected product properties like apparent and bulk density or angle of repose. Abbreviations GLR gas-to-liquid ratio

HR Hausner ratio

MDX maltodextrin

PSD particle size distribution

SEM scanning electron microscope.

     

Monte Carlo simulation of terpolymerization: Optimizing the simulation and post-processing times

Monte Carlo simulations are a useful and easy way to understand a polymerization reaction process properly. However, achieving reliable results with Monte Carlo simulations can also lead to prohibitive computational times and a considerable amount of data to be processed afterward. The present study analyses the Monte Carlo simulation of a steady-state terpolymerization process to reduce the overall computational time of the simulation and the post-processing of its results. Different sorting algorithms (Bubble, Insertion, Selection, and Tim) and Python libraries (Joblib and Numba) were used. The chain composition distribution and the micro-structures resultant of different scenarios were assessed by processing the simulated mechanism results. The simulation time results indicate the Tim sorting algorithm as the best to use in the post-processing step and the Numba library as the best suited for both the simulation and the post-processing step.     

On the origin of emission and thermal quenching of SRSO:Er3+ films grown by ECR-PECVD

Silicon nanocrystals embedded in a silicon-rich silicon oxide matrix doped with Er³⁺ ions have been fabricated by electron cyclotron resonance plasma-enhanced chemical vapor deposition. Indirect excitation of erbium photoluminescence via silicon nanocrystals has been investigated. Temperature quenching of the photoluminescence originating from the silicon nanocrystals and the erbium ions has been observed. Activation energies of the thermally activated quenching process were estimated for different excitation wavelengths. The temperature quenching mechanism of the emission is discussed. Also, the origin of visible emission and kinetic properties of Er-related emission have been discussed in details.     

Correlation between matrix structural order and compressive stress exerted on silicon nanocrystals embedded in silicon-rich silicon oxide

Abstract

Silicon nanocrystals embedded in a silicon oxide matrix were deposited by radio frequency reactive magnetron sputtering. By means of Raman spectroscopy, we have found that a compressive stress is exerted on the silicon nanocrystal cores. The stress varies as a function of silicon concentration in the silicon-rich silicon oxide layers varies, which can be attributed to changes of nanocrystal environment. By conducting the Fourier transform infrared absorption experiments, we have correlated the stresses exerted on the nanocrystal core to the degree of matrix structural order.

PACS

78.67.Bf, 78.67.Pt, 73.63.Bd, 78.47.D, 74.25.Nd     

Nonionic surfactants and dispersants for biopolishing and stonewashing with Hypocrea jecorina cellulases

Cellulases are widely applied in textile finishing, such as for the removal of protruding surface fibrils to reduce pilling propensity and to achieve the worn‐out look in denim garments. The main drawback of enzymatic denim processing is the back‐staining of indigo, which reduces the desired blue–white contrast. Alongside an accurate selection of the type of cellulase or vigorous post‐washing of the garments, the simultaneous application of auxiliaries in the enzymatic treatment may help to reduce back‐staining and improve cellulase efficiency. In the present work, the influence of additives such as surfactants and dispersing agents on indigo adsorption and on the treatment of an undyed cotton fabric with Hypocrea jecorina cellulases was investigated. Indigo adsorption was successfully reduced by more than 75% with ethoxylated nonionic surfactants at concentrations below 0.2 g l^?1. The weight loss of cotton fabrics after 120 min treatment was significantly increased with nonionic surfactants and polyvinylpyrrolidone. It could be further shown that protein adsorption on the cotton fabric decreased with the increasing concentration of the additives, while the nonionic surfactants were more efficient than the polyvinylpyrrolidone. Adsorption of a complete cellulase mixture was affected differently by the surfactants than by an exoglucanase‐free endoglucanase‐rich preparation.     

Exogenous Ghrelin Accelerates the Healing of Acetic Acid-Induced Colitis in Rats

Previous studies have shown that ghrelin reduces colonic inflammation induced by trinitrobenzene sulfonic acid and dextran sodium sulfate. In the present study we determined the effect of treatment with ghrelin on the course of acetic acid-induced colitis in rats. Rectal administration of 3% acetic acid solution led to induction of colitis in all animals. Damage of the colonic wall was accompanied by an increase in mucosal concentration of pro-inflammatory interleukin-1β (IL-1β) and tumor necrosis factor-α (TNF-α), as well mucosal activity of myeloperoxidase. Moreover, induction of colitis led to a reduction in colonic blood flow and DNA synthesis. Administration of ghrelin after induction of colitis led to faster regeneration of the colonic wall and reduction in colonic levels of IL-1β, TNF-α, and myeloperoxidase. In addition, treatment with ghrelin improved mucosal DNA synthesis and blood flow. Our study disclosed that ghrelin exhibits a strong anti-inflammatory and healing effect in acetic acid-induced colitis. Our current observation in association with previous findings that ghrelin exhibits curative effect in trinitrobenzene sulfonic acid- and dextran sodium sulfate-induced colitis suggest that therapeutic effect of ghrelin in the colon is universal and independent of the primary cause of colitis.     

Evaluating the expedited forwarding of voice traffic in a differentiated services network

The Differentiated Services architecture offers a scalable alternative to provide Quality of Service (QoS) to the new multimedia applications in the Internet. This paper aims at evaluating the delay and jitter experienced by voice traffic when handled by the Expedited Forwarding (EF) scheme. The analysis includes the effects of different packet scheduling mechanisms implementing EF and of the voice packet size. We also evaluate how efficiently each type of traffic uses an extra allocated bandwidth and the impact of traffic shaping. The results show that increasing the service rate share allocated to the EF aggregate does not significantly affect the competing best effort (BE) traffic. This holds as long as the BE traffic can use the bandwidth left unused by the EF traffic in idle periods. Copyright © 2002 John Wiley & Sons, Ltd.     

Molecular speciation of sulfur in solid oxide fuel cell anodes with X-ray absorption spectroscopy

Two sets of solid oxide fuel cell (SOFC) electrode assemblies from different manufacturers were run under different operating conditions with different sulfur exposure, and then subjected to X-ray absorption spectroscopy (XAS) at the sulfur K (1s) edge. Within the detection limits of the spectrometer, pristine fuel electrodes (anodes) show no traces of sulfur. The anodes operated with sulfur-containing natural gas and H₂S doped natural gas show spectra rich in sulfur structures. Two other electrodes run with sulfur-containing natural gas, one with a sulfur filter and the other without, show an XAS spectrum with a very broad peak, covering the entire sulfur absorption range, and thus not allowing for identification of specific sulfur signatures. These appear to be the first ever reported sulfur XAS data on SOFC anodes, and the XAS technique shows promise to resolve some hitherto unsolved issues on sulfur poisoning of SOFC, particularly regarding the molecular speciation of the sulfur components.