Polymorphism of bacteriophage T7

For viruses made of nucleic acid and protein, the structure of the protein outer shell has, in the past, been found to be uniquely determined by the viral genome. However, here, non-denaturing agarose gel electrophoresis of bacteriophage T7 reveals two states of the mature T7 capsid; the conditions of growth are found to alter the population by T7 of these two electrophoretically defined states. Both states have been previously observed for a genetically altered T7 and they are observed here for wild-type T7. The average electrical surface charge density of a bacteriophage particle (delta) determines its state; the delta of particles in both states is negative. For a given condition of growth, the population of these two states is influenced by the extent to which the major T7 outer shell protein, p10A, is accompanied by its minor readthrough variant, p10B. Comparison of the two electrophoretic states reveals the following. (1) No difference in radius is present in the outer shell (+/-2%). (2) As the pH of electrophoresis is either increased or decreased from neutrality, the state becomes more highly populated for which delta is greater in magnitude (state 1). By changing the pH, some T7 particles are made to change state. (3) Particles in state 1 adsorb less quickly to host cells than do the particles in the alternative state (state 2). This latter observation suggests the hypothesis that state 1 evolved to reduce the probability of re-initiating an infection when conditions are not favorable for growth. This hypothesis is supported by the observation that, as conditions of growth become apparently more unfavorable, progeny increasingly populate state 1.     

Visceral leishmaniasis: II. Histiocyte ultrastructure in bone marrow associated with low level of parasitaemia and mimicking malignant histiocytosis

The ultrastructural features of histiocytes in the bone marrow (BM) were studied in a febrile, splenomegalic and pancytopenic Sudanese patient who was diagnosed by one of us as visceral leishmaniasis (VL) associated with low level of parasitaemia and mimicking malignant histiocytosis (MH). Serial thick (STS) and ultrathin (SUT) sections showed that the BM was hypercellular and markedly infiltrated by large histiocytes with prominent phagocytosis. A thorough examination of various ST and UT section revealed only a single, typical Leishman-Donovan body. At transmission electron microscopy (TEM) level, two principal types of histiocytic cells were identified: Type I, subdivided into two subtypes, were actively phagocytic histiocytes (PH) with large digestive vacuoles and primary lysosomes; type II were nonphagocytic histiocytes (nPH) with primary lysosomes only. The rate of PH to nPH ws 7:2 in plastic STS. The interaction between the PH and ingested cells is described. Both types of cell were morphologically similar to previously described malignant histiocytic cells. However, this study showed a better characterization of PH during VL.     

Consistent labeling of tracked objects in multiple cameras with overlapping fields of view

We address the issue of tracking moving objects in an environment covered by multiple uncalibrated cameras with overlapping fields of view, typical of most surveillance setups. In such a scenario, it is essential to establish correspondence between tracks of the same object, seen in different cameras, to recover complete information about the object. We call this the problem of consistent labeling of objects when seen in multiple cameras. We employ a novel approach of finding the limits of field of view (FOV) of each camera as visible in the other cameras. We show that, if the FOV lines are known, it is possible to disambiguate between multiple possibilities for correspondence. We present a method to automatically recover these lines by observing motion in the environment, Furthermore, once these lines are initialized, the homography between the views can also be recovered. We present results on indoor and outdoor sequences containing persons and vehicles.     

An overview of FDA medical device regulation as it relates to deep brain stimulation devices.

The United States Food and Drug Administration (FDA) is charged with assuring the safety and effectiveness of a variety of medical products and the FDA's Center for Devices and Radiological Health is responsible for premarket and postmarket regulation of medical devices. In this paper, we review--from device classification and clinical studies to the final marketing application--FDA's premarket requirements and postmarket requirements as they relate to deep brain stimulation devices.     

Electromagnetic Resistive Drift Instability in Current Carrying Low Temperature Tokamak Edges

It is shown that the purely growing electrostatic rippling mode can couple with the shear Alfven wave to give rise to an oscillatory electromagnetic instability in tokamak edge regions. This mechanism can be one of the causes of electromagnetic fluctuations observed near plasma edges. This instability can occur only in the very low temperature regions where resistivity fluctuations can become important due to large electron-ion collision frequency.     

Low-loss high power RF switching using multifinger AlGaN/GaN MOSHFETs

We demonstrate a novel RF switch based on a multifinger AlGaN/GaN MOSHFET. Record high saturation current and breakdown voltage, extremely low gate leakage current and low gate capacitance of the III-N MOSHFETs make them excellent active elements for RF switching. Using a single element test circuit with 1-mm wide multifinger MOSHFET we achieved 0.27 dB insertion loss and more than 40 dB isolation. These parameters can be further improved by impedance matching and by using submicron gate devices. The maximum switching power extrapolated from the results for 1A/mm 100 /spl mu/m wide device exceeds 40 W for a 1-mm wide 2-A/mm MOSHFET.     

The optimisation of higher order resampling methods in a multiprocessor environment

The processing of images obtained from satellites often involves highly repetitive calculations on very large amounts of data. This processing is extremely time consuming when these calculations are performed on sequential machines. Parallel computers are well suited to handling computationally expensive operations such as higher order interpolations on large data sets. This paper decribes work undertaken to develop parallel implementations of a set of resampling procedures on an Alliant VFX/4. Each resampling procedure implemented has been optimised in three stages. First, the algorithm has been restructured, where two-dimensional resampling is performed by two one-dimensional resampling operations. Second, each procedure has been reprogrammed in such a way that the autoparallelisation provided by the FX/Fortran compiler has been exploited. Thirdly, data dependent analysis of each procedure has been performed in order to achieve full optimization of each procedure; each procedure has been restructured where appropriate to circumvent vectorisation and concurrency inhibiting data dependencies. The nature and extent of the code optimization achieved for each procedure is presented in this paper. The original code for the most computationally expensive procedure, as targeted at a sequential machine, was found to have an execution time of 4900 seconds on the Alliant VFX/4 when compiled with regular compiler optimization options. Following algorithmic redesigning and reprogramming of the code, as indicated in stage 1 and stage 2, the execution time was reduced to 248 seconds. Restructuring of the code following data dependency analysis indicated in stage 3 in order to avoid data dependencies and allow concurrency and vectorisation, further reduced execution time to 162 seconds. The consequence of this work is that higher-order resampling methods which had not previous been practical are now routinely performed on the Alliant VFX/4 at the University of Dundee.     

Calcium phosphate/calcium oxalate crystal association in urinary stones: implications for heterogeneous nucleation of calcium oxalate

PURPOSE: Most stones contain more than one type of crystals, and some combinations, such as calcium phosphate/calcium oxalate, are more common than others. Epitaxy between the crystals has been suggested to play a role in growth of such stones. The specific aim of this study is to investigate the involvement of calcium phosphate in crystallization of calcium oxalate. MATERIALS AND METHODS: Twenty calcium oxalate stones or stone fragments were examined using various microscopic techniques, including scanning, transmission and back-scattered electron microscopy. Similarly, calcium oxalate stones induced on a plastic foreign body implanted inside urinary bladders of laboratory rats were also investigated. Examination of the interface between calcium phosphate and calcium oxalate crystals was emphasized. RESULTS: Close association between crystals of calcium phosphate and calcium oxalate were found in both the human and rat stones. All crystals examined were associated with an organic matrix on the surface and contained copious amounts of organic material within the crystalline entities. Interface between the crystals also appeared to be occupied by organic matrix. CONCLUSIONS: Results of this and other studies from our laboratory indicate that epitaxy between various crystals, even though theoretically possible, appears unlikely in vivo. The appearance of specific crystalline combinations in stones is probably a result of the urinary environment being conducive for crystallization of those components. Heterogeneous nucleation of calcium oxalate is most probably induced by biological elements, including membranous cellular degradation products.