Tissue dynamics spectroscopy for three-dimensional tissue-based drug screening

Tissue dynamics spectroscopy combines dynamic light scattering with short-coherence digital holography to capture intracellular motion inside multicellular tumor spheroid tissue models. The cellular mechanical activity becomes an endogenous imaging contrast agent for motility contrast imaging. Fluctuation spectroscopy is performed on dynamic speckle from the proliferating shell and hypoxic core to generate drug-response spectrograms that are frequency versus time representations of the changes in spectral content induced by an applied compound or an environmental perturbation. A combination of 28 reference compounds and conditions applied to rat osteogenic UMR-106 spheroids generated spectrograms that were crosscorrelated in a similarity matrix used for unsupervised hierarchical clustering of similar compound responses. This work establishes the feasibility of tissue dynamics spectroscopy for three-dimensional tissue-based phenotypic profiling of drug response as a fully endogenous probe of the response of tissue to reference compounds.     

On the undecidability of the limit behavior of Cellular Automata

Cellular Automata (CA) are discrete dynamical systems and an abstract model of parallel computation. The limit set of a cellular automaton is its maximal topological attractor. A well-known result, due to Kari, says that all nontrivial properties of limit sets are undecidable. In this paper we consider the properties of limit set dynamics, i.e. properties of the dynamics of CA restricted to their limit sets. There can be no equivalent of Kari’s theorem for limit set dynamics. Anyway we show that there is a large class of undecidable properties of limit set dynamics, namely all properties of limit set dynamics which imply stability or the existence of a unique subshift attractor. As a consequence we have that it is undecidable whether the cellular automaton map restricted to the limit set is the identity map and whether it is closing, injective, expansive, positively expansive and transitive.     

ITEA—interactive trajectories and events analysis: exploring sequences of spatio-temporal events in movement data

Widespread use of GPS and similar technologies makes it possible to collect extensive amounts of trajectory data. These data sets are essential for reasonable decision making in various application domains. Additional information, such as events taking place along a trajectory, makes data analysis challenging, due to data size and complexity. We present an integrated solution for interactive visual analysis and exploration of events along trajectories data. Our approach supports analysis of event sequences at three different levels of abstraction, namely spatial, temporal, and events themselves. Customized views as well as standard views are combined to form a coordinated multiple views system. In addition to trajectories and events, we include on-the-fly derived data in the analysis. We evaluate our integrated solution using the IEEE VAST 2015 Challenge data set. A successful detection and characterization of malicious activity indicate the usefulness and efficiency of the presented approach.     

Accuracy considerations in navigated cup placement for total hip arthroplasty

Computer assisted orthopaedic surgery (CAOS) technology has recently been introduced to overcome problems resulting from acetabular component malpositioning in total hip arthroplasty. Available navigation modules can conceptually be categorized as computer tomography (CT) based, fluoroscopy based, or image-free. The current study presents a comprehensive accuracy analysis on the computer assisted placement accuracy of acetabular cups. It combines analyses using mathematical approaches, in vitro testing environments, and an in vivo clinical trial. A hybrid navigation approach combining image-free with fluoroscopic technology was chosen as the best compromise to CT-based systems. It introduces pointer-based digitization for easily assessable points and bi-planar fluoroscopy for deep-seated landmarks. From the in vitro data maximum deviations were found to be 3.6 degrees for inclination and 3.8 degrees for anteversion relative to a pre-defined test position. The maximum difference between intraoperatively calculated cup inclination and anteversion with the postoperatively measured position was 4 degrees and 5 degrees, respectively. These data coincide with worst cases scenario predictions applying a statistical simulation model. The proper use of navigation technology can reduce variability of cup placement well within the surgical safe zone. Surgeons have to concentrate on a variety of error sources during the procedure, which may explain the reported strong learning curves for CAOS technologies.     

Anatomical structure modeling from medical images

Some clinical applications, such as surgical planning, require volumetric models of anatomical structures represented as a set of tetrahedra. A practical method of constructing anatomical models from medical images is presented. The method starts with a set of contours segmented from the medical images by a clinician and produces a model that has high fidelity with the contours. Unlike most modeling methods, the contours are not restricted to lie on parallel planes. The main steps are a 3D Delaunay tetrahedralization, culling of non-object tetrahedra, and refinement of the tetrahedral mesh. The result is a high-quality set of tetrahedra whose surface points are guaranteed to match the original contours. The key is to use the distance map and bit volume structures that were created along with the contours. The method is demonstrated on computed tomography, MRI and 3D ultrasound data. Models of 170,000 tetrahedra are constructed on a standard workstation in approximately 10s. A comparison with related methods is also provided.     

Avoidance of bird repellents by mice (Mus musculus)

It is believed that mammalian chemosensory irritants are not aversive to birds and vice versa. Nevertheless, few avian repellents have been tested against mammals. For that reason, we evaluated the efficacy of 1.0% w/v methyl anthranilate, orthoaminoacetophenone, 2-amino-4,5-methoxyacetophenone, 2-methoxyacetophenone, and veratryl amine as mouse repellents in 3-hr no-choice drinking tests. Relative to ingestion of plain water, all test substances significantly reduced (P < 0.05) intake. Orthoaminoaceto-phenone was the most effective repellent, with intake reduced to levels statistically indistinguishable from zero.     

Personality-structure in different kinds of bronchial asthma (author's transl)

The "Giessen-Test" is a psychological test in form of a questionnaire, basing on self-assessment. It was applied in 63 patients with bronchial asthma in order to get their "self-images" and their "ideal-self-images". Except of higher values for depression the "self-images" of the asthmatics resembled very closely those of normals. The ideals ("ideal-self-image") of the patients were uncharacteristic and reflected general trends. In contrast to these findings eleven physicians had a negative conception of asthmatic patients ("foreign image"). Physicians assessed the asthmatics to be disliked ("negative social resonant"), obstinate ("dominant") and depressive. Patients with exogen-allergic asthma, intrinsic asthma and asthma of unknown origin differ from each other only within a few marks. These differences, however, are not sufficient, to allow to coordinate a specific personality-structure with one of the different kinds of asthma.     

Multispectral image compression using eigenregion-based segmentation

In the study, a novel segmentation technique is proposed for multispectral satellite image compression. A segmentation decision rule composed of the principal eigenvectors of the image correlation matrix is derived to determine the similarity of image characteristics of two image blocks. Based on the decision rule, we develop an eigenregion-based segmentation technique. The proposed segmentation technique can divide the original image into some proper eigenregions according to their local terrain characteristics. To achieve better compression efficiency, each eigenregion image is then compressed by an efficient compression algorithm eigenregion-based eigensubspace transform (ER-EST). The ER-EST contains 1D eigensubspace transform (EST) and 2D-DCT to decorrelate the data in spectral and spatial domains. Before performing EST, the dimension of transformation matrix of EST is estimated by an information criterion. In this way, the eigenregion image may be approximated by a lower-dimensional components in the eigensubspace. Simulation tests performed on SPOT and Landsat TM images have demonstrated that the proposed compression scheme is suitable for multispectral satellite image.     

Stabilization of pluronic gels in the presence of different polysaccharides

Several different polysaccharides have been added to pluronic F127 (poloxamer 407) gels to test their ability to stabilize the gels against dissolution in aqueous media over time. The studied polysaccharides include κ‐carrageenan, chitosan, hyaluronic acid, pectin, alginate, hydroxyethylcellulose, and ethyl(hydroxyethyl)cellulose. Although all the considered polysaccharides slowed down the dissolution time of the pluronic gels, unmodified polysaccharides only had a modest stabilization effect. However, hydrophobic modification of polysaccharides with a sufficiently long hydrocarbon chain (C₁₆) was found to partly prevent the gels from dissolving for more than 6 months. Shorter hydrocarbon chains did not have the same effect, even at high degrees of hydrophobicity. © 2014 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2014 , 131, 40465.