PetFMM—A dynamically load‐balancing parallel fast multipole library

Fast algorithms for the computation of N‐body problems can be broadly classified into mesh‐based interpolation methods, and hierarchical or multiresolution methods. To this latter class belongs the well‐known fast multipole method (FMM ), which offers ??(N) complexity. The FMM is a complex algorithm, and the programming difficulty associated with it has arguably diminished its impact, being a barrier for adoption. This paper presents an extensible parallel library for N‐body interactions utilizing the FMM algorithm. A prominent feature of this library is that it is designed to be extensible, with a view to unifying efforts involving many algorithms based on the same principles as the FMM and enabling easy development of scientific application codes. The paper also details an exhaustive model for the computation of tree‐based N‐body algorithms in parallel, including both work estimates and communications estimates. With this model, we are able to implement a method to provide automatic, a priori load balancing of the parallel execution, achieving optimal distribution of the computational work among processors and minimal inter‐processor communications. Using a client application that performs the calculation of velocity induced by N vortex particles in two dimensions, ample verification and testing of the library was performed. Strong scaling results are presented with 10 million particles on up to 256 processors, including both speedup and parallel efficiency. The largest problem size that has been run with the P etFMM library at this point was 64 million particles in 64 processors. The library is currently able to achieve over 85% parallel efficiency for 64 processes. The performance study, computational model, and application demonstrations presented in this paper are limited to 2D. However, the software architecture was designed to make an extension of this work to 3D straightforward, as the framework is templated over the dimension. The software library is open source under the PETS c license, even less restrictive than the BSD license; this guarantees the maximum impact to the scientific community and encourages peer‐based collaboration for the extensions and applications. Copyright © 2010 John Wiley & Sons, Ltd.     

Proportioning of reinforced concrete column sections

Relatively simplistic recommendations are widely available for the preliminary sizing of reinforced concrete columns. A simple, more precise approach is developed herein. The neutral axis depth and reinforcement required to provide a desired resistance to axial load and moment was determined analytically for the common case of symmetrically distributed reinforcement. Readily available solver routines are used to determine section dimensions required to provide the desired axial and flexural strength, for a desired reinforcement ratio. The approach is illustrated for two examples, including a case in which independent load combinations cause bending about each principal axis of the section.     

Effect of ripening stage of grapes on the low molecular weight phenolic compounds of red wines

Different red wines were elaborated to study the effect of the date of the grape harvest on the levels of individual low molecular weight phenolic compounds, which are chiefly responsible for the wine color. Two red grape varieties and two consecutive years were studied at three different harvesting stages of grapes, and the changes during the 18 months of wine aging (12 months in oak barrels and 6 months in the bottle) were also followed. The results showed that the wines made from grapes harvested 1 week later than the usual date generally had higher contents of some simple phenols, which can act as cofactors that can maintain the color intensity and violet tonalities in aged wines. Besides, these wines had lower levels of caftaric and coutaric acids, which are two of the main substrates for oxidation and browning processes.     

The roles of the N-linked glycans and extension regions of soybean beta-conglycinin in folding, assembly and structural features

Beta-conglycinin, one of the dominant storage proteins of soybean, is a trimer composed of three subunits, alpha, alpha' and beta. All subunits are N-glycosylated and alpha and alpha' contain extension regions in addition to the core regions common to all subunits. Non-glycosylated individual subunits and deletion mutants (alpha(c) and alpha'(c)) lacking the extension regions of alpha and alpha' were expressed in Escherichia coli. All recombinant proteins were purified to near homogeneity and appeared to have the correct conformation, as judged by CD, density-gradient centrifugation and gel-filtration profiles, indicating that the N-linked glycans and extension regions are not essential for the folding and the assembly into trimers of beta-conglycinin. Density-gradient centrifugation, gel-filtration and differential scanning calorimetry profiles of the recombinant proteins and the native beta-conglycinin indicated that the N-linked glycans and extension regions contribute to the dimension of beta-conglycinin but not to the density and the thermal stability. Comparing the solubilities of the individual subunits with those of deletion mutants, only the alpha and alpha' subunits were soluble at lower ionic strength (mu < 0.25) at around the pH value of the endoplasmic reticulum. This suggests that the extension regions play an important role in the prevention of aggregation in the endoplasmic reticulum in analogy with the N-linked glycans.     

Preparation and Characterization of NTC Thermistors: Nickel Manganites Doped with Lithium

Oxides of the form Ni_xMn_3-x O₄ present properties that make them useful as NTC thermistors. Nickel manganites doped with lithium were synthesized by two methods: insertion with n -BuLi and reaction of nickel-manganese formates with lithium formate. XPS and XRD studies showed that both procedures led to oxides with spinel structure, although with different cation distributions. Dilatometry established that a cationic reordering took place on manganites doped by insertion with n -BuLi during sintering. SEM mapping studies showed that a segregation on grain boundaries took place, leading to an increase in Mn content and a decrease in nickel on the particle surface. Finally, electrical studies showed the nickel manganites doped with lithium, Ni_xMn_3-x-yLi_yO₄, had similar resistivities and sensitivity indexes to nickel manganites, Ni_xMn_3-xO₄, but higher electrical stability.     

Solid phase microextraction (SPME) applied to honey quality control

The assessment of the botanical origin of unifloral honeys is an important application in food control. The current official methods mainly use pollen analysis. The aim of this paper is to present an SPME analytical approach to the study of honey volatiles. Honey samples (40) obtained from hive sites in different regions of Italy were analysed. The samples had six different botanical origins: citrus (five), chestnut (10), eucalyptus (eight), lime tree (11), thyme (two) and dandelion (four). Melissopalynological analysis was also performed. Identification of volatile compounds was carried out by SPME/GC/MS analysis, and quantitative evaluation was done by SPME/GC/FID analysis for compounds with well‐resolved peaks. Using the SPME method, all samples with the same botanical origin gave remarkably similar GC profiles. Some volatile compounds were found only in specific floral source honey samples and thus could be interesting for use as markers. Copyright © 2003 Society of Chemical Industry     

Network and single user performance evaluation of a mobile data system over flat fading transmission channels

In this paper the contrasting effects of transmission impairments and capture on both the network and single user performance of a slotted Aloha system are investigated in a mobile radio environment, accounting for frequency non-selective random propagation phenomena, and employing the packet error probability in order to define packet losses and capture. With this study we demonstrate that it is possible to generalize in a real propagation context a method previously proposed in literature for evaluating the network behavior in terms of steady-state throughput, backlog and stability in conventional transmission conditions, i.e., when all the transmission channels were error-free and the collisions caused the loss of all the packets involved. Moreover, we indicate under which specific constraints on the terminal mobility we can apply this method to analytically predict the single user performance, which we show being an important design parameter. Through the numerical results reported we quantitatively point out that in the absence of coding capture increases system stability and moderately improves the overall system throughput and backlog. We also outline the trade-off between an increased capture gain obtained by means of coding and the corresponding system cost in terms of complexity and bandwidth occupancy. Furthermore, we demonstrate the unfairness which affects the single user performance and the consequent need for countermeasures in order not to discriminate among users differently located within the network; yet, this last solution is detrimental as regards the positive capture effects.This work was supported by M.U.R.S.T. and C.N.R. (Italy).     

Perspectives on allelopathy in mexican traditional agroecosystems: A case study in tlaxcala

Agroecosystems in Tlaxcala, Mexico, are surrounded by trees and water channels and have a great variety of cultivated and noncultivated plants. The main results of a study carried out on a traditional agroecosystem in Santa Inés, Tlaxcala are presented. Some ecological aspects of polycultures, plant covers (dry leaves ofAlnus firmifolia, Berula erecta, andJuncus sp.), and the allelopathic potential of crops and noncultivated plants (fresh and dry material) were analyzed. The main plants (trees, shrubs, and herbs) present in the agroecosystem were identified. The total number of weeds in plots where plant covers were added was reduced. The number of nodules ofRhizobium phaseoli and the production of bean and squash increased with plant covers. Corn, beans, and squash showed a clear allelopathic effect, as well asChenopodium murale, Tradescantia crassifolia, Melilotus indicus, andAmaranthus hybridus, among other weeds. The contribution of allelopathy in studies of traditional agroecosystems is of great importance for the management of species in space and time. Allelopathy can be the basis of biological control of pests and weeds and of the discovery of new useful substances.     

Lactone formation by anodic oxidation of dicarboxilic acids,with non-rigid structure

In the anodic oxidation of glutaric acid and its α-methyl and α,α-dimethyl derivatives, lactonic products were formed through ionic intermediates, increasing the yielding as carbocation stability is increased in accordance with the degree substitution.