Non-Enzymatic Template-Directed Recombination of RNAs

RNA non-enzymatic recombination reactions are of great interest within the hypothesis of the “RNA world”, which argues that at some stage of prebiotic life development proteins were not yet engaged in biochemical reactions and RNA carried out both the information storage task and the full range of catalytic roles necessary in primitive self-replicating systems. Here we report on the study of recombination reaction occuring between two 96 nucleotides (nts) fragments of RNAs under physiological conditions and governed by a short oligodeoxyribonucleotide template, partially complementary to sequences within each of the RNAs. Analysis of recombination products shows that ligation is predominantly template-directed, and occurs within the complementary complex with the template in “butt-to-butt” manner, in 1- or 3- nts bulges or in 2–3 nts internal loops. Minor recombination products formed in the template-independent manner are detected as well.     

Antioxidant Effects of Berry Phenolics Incorporated in Oil-in-Water Emulsions with Continuous Phase β-Lactoglobulin

The purpose of this study was to evaluate the effects of berry phenolics, in this case, black currant (Ribes nigrum) anthocyanins and raspberry (Rubus idaeus) ellagitannins, in the presence of continuous phase β-lactoglobulin (β-Lg), on the oxidative stability of Brij 35-stabilized corn oil-in-water emulsions. The extent of lipid oxidation in emulsions was measured by determining the formation of lipid hydroperoxides and hexanal, and extent of protein oxidation by monitoring the loss of tryptophan and cysteine residues in the continuous phase β-Lg. Berry phenolics at concentration levels of 20 and 50 μM were able to prevent lipid oxidation with and without β-Lg in the aqueous phase. The results show that a combination of β-Lg and berry phenolics was more efficient in inhibiting hexanal formation than either component alone. Synergistic effects on antioxidant activity toward hexanal were observed only at the 20 μM levels of berry phenolics in combination with continuous phase β-Lg. The berry phenolics were also able to inhibit the oxidation of tryptophan and cysteine residues of β-Lg. The results show that the amino acid residues were oxidized prior to the propagation of lipid oxidation. This suggests that these amino acids were able to inhibit fatty acid scission. The information gained from this study would be useful in protecting emulsion-based food products from oxidative deterioration.     

The identification and characterization of fusogenic domains in herpes virus glycoprotein B molecules

The molecular mechanism of entry of herpes viruses requires a multicomponent fusion system. Virus entry and cell-cell fusion of Herpes simplex virus (HSV) requires four glycoproteins: gD, gB and gH/gL. The role of gB remained elusive until recently, when the crystal structure of HSV-1 gB became available. Glycoprotein B homologues represent the most highly conserved group of herpes virus glycoproteins; however, despite the high degree of sequence and structural conservation, differences in post-translational processing are observed for different members of this virus family. Whereas gB of HSV is not proteolytically processed after oligomerization, most other gB homologues are cleaved by a cellular protease into subunits that remain linked through disulfide bonds. Proteolytic cleavage is common for activation of many other viral fusion proteins, so it remains difficult to envisage a common role for different herpes virus gB structures in the fusion mechanism. We selected bovine herpes virus type 1 (BoHV-1) and herpes simplex virus type 1 (HSV-1) as representative viruses expressing cleaved and uncleaved gBs, and have screened their amino acid sequences for regions of highly interfacial hydrophobicity. Synthetic peptides corresponding to such regions were tested for their ability to induce the fusion of large unilamellar vesicles and to inhibit herpes virus infection. These results underline that several regions of the gB protein are involved in the mechanism of membrane interaction.     

Microwave-assisted polyol synthesis of sub-micrometer Y2O3 and Yb-Y2O3 particles for laser source application

Sub-micrometer powder (100–150 nm diameter) of Yb-doped yttrium oxide was obtained, for the first time, by microwave-assisted polyol (diethylene glycol, DEG) method. This method is based on fast and homogeneous increase of temperature, due to the microwave heating, and on addition of the hydrolysing agent (water) at high temperature. This promotes a fast nucleation followed by a controlled growth of nuclei. Different procedures were used to process the as-synthesized powders. In some cases washing by ultrapure water was used to dissolve nitrate and DEG by-products, this treatment allowed the use of a lower calcination temperature (150–200 °C less) to obtain the crystalline phase. Analysis of the calcined powder showed different levels of structures: from nanocrystal (10–15 nm), to primary particles (100–150 nm), to micrometer soft aggregates (2–4 μm). The microwave-assisted polyol method resulted an easy way to dope yttria with the desired amount of Yb³⁺. This work was carried out in order to prepare particles to be used as rare-earth doped Y₂O₃ and YAG polycrystalline transparent ceramic for laser source applications.     

Gas sensing properties of nanocrystalline diamond films

Toxic gas sensing device with metal electrodes built into nanocrystalline diamond (NCD) is investigated. The NCD morphology is controlled via seeding and/or deposition time. The surface properties and morphology of NCD are studied using scanning electron microscopy (SEM) and atomic force microscopy (AFM). AFM measurements reveal increase in NCD surface area by up to 13%. Gas sensing properties of H-terminated NCD device show high sensitivity towards oxidizing species where the surface conductivity is increased by an order of magnitude for humid air and by three orders of magnitude for COCl₂. The surface conductivity exhibits a small decrease to reducing spices (CO₂, NH₃).     

Particle In-Flight and Coating Properties of Fe-Based Feedstock Materials Sprayed with Modern Thermal Spray Systems

New developments in the field of thermal spraying systems (increased particle velocities, enhanced process stability) are leading to improved coatings. Innovations in the field of feedstock materials are supporting this trend. The combination of both has led to a renaissance of Fe-based feedstocks. Using modern APS or HVOF systems, it is now possible to compete with classical materials for wear and corrosion applications like Ni-basis or metal-matrix composites. This study intends to give an analysis of the in-flight particle and spray jet properties achievable with two different modern thermal spraying systems using Fe-based powders. The velocity fields are measured with the Laser Doppler Anemometry. Resulting coatings are analyzed and a correlation with the particle in-flight properties is given. The experiments are accompanied by computational fluid dynamics simulations of spray jet and particle velocities, leading to a comprehensive analysis of the achievable particle properties with state-of-the-art HVOF and APS systems.     

Synthesis and properties of boron-containing soybean oil based thermosetting copolymers

The first example of boron-containing soybean oil based copolymers was prepared from soybean oil, styrene, divinylbenzene and 4-vinylphenyl boronic acid by cationic polymerization using boron trifluoride etherate as initiator. Soxhlet extraction and NMR spectroscopy indicate that the copolymers consist of a crosslinked network plasticized with varying amounts of oligomers and unreacted oil. The thermal degradation mechanism was studied and the thermal, dynamomechanical and flame retardant properties of these materials were examined. Thermosets with glass transition temperatures ranging from 43 to 60 °C, which are thermally stable below 350 °C and with LOI values from 23.7 to 25.6 were obtained. The LOI tests indicate that the flame retardant properties of vegetable oil can be improved by adding boron covalently bonded to the polymer.     

Biodiesel blend effects on common-rail diesel combustion and emissions

Biodiesel (fatty acid methylesters) blends with fossil diesel at a mixing ratio between 0.5 and 5 vol.% are widely offered as automotive fuels in Europe. The target for the future is to bring this ratio to at least 10%, in order to increase the share of renewable energy in transport. There is however limited evidence on the effects of such blends on the combustion and emissions of diesel engines not originally designed to operate on biodiesel blends. In this study, a number of experiments with 10 vol.% (B10) biodiesel fuel of palmoil origin were performed on a light-duty common-rail Euro 3 engine. The measurements included in-cylinder pressure, pollutants emissions, and fuel consumption. Combustion effects were limited but changes in the start of ignition and heat-release rate could be identified. Emission effects included both higher and lower smoke and NOx, depending on the operation point. The results on the engine bench were compared against a Euro 3 common-rail light-duty vehicle driven on the chassis dynamometer, in order to include the effects of emission control systems (EGR and oxidation catalyst). In addition to the palm biodiesel, an RME-diesel blend was also tested to examine the effects of a fuel with different characteristics. Both biodiesel blends reduced PM emissions and only marginal effects on NOx over the certification test could be identified. The results of this study show that up to 10% biodiesels could be used on current diesel vehicles, without significantly affecting vehicle emission performance.     

Mechanisms of Reciprocal Regulation of Gonadotropin-Releasing Hormone (GnRH)-Producing and Immune Systems: The Role of GnRH,Cytokines and Their Receptors in Early Ontogenesis in Normal and Pathological Conditions

Different aspects of the reciprocal regulatory influence on the development of gonadotropin-releasing hormone (GnRH)-producing- and immune systems in the perinatal ontogenesis and their functioning in adults in normal and pathological conditions are discussed. The influence of GnRH on the development of the immune system, on the one hand, and the influence of proinflammatory cytokines on the development of the hypothalamic-pituitary-gonadal system, on the other hand, and their functioning in adult offspring are analyzed. We have focused on the effects of GnRH on the formation and functional activity of the thymus, as the central organ of the immune system, in the perinatal period. The main mechanisms of reciprocal regulation of these systems are discussed. The reproductive health of an individual is programmed by the establishment and development of physiological systems during critical periods. Regulatory epigenetic mechanisms of development are not strictly genetically controlled. These processes are characterized by a high sensitivity to various regulatory factors, which provides possible corrections for disorders.     

Some Molecular and Cellular Stress Mechanisms Associated with Neurodegenerative Diseases and Atherosclerosis

Chronic stress is a combination of nonspecific adaptive reactions of the body to the influence of various adverse stress factors which disrupt its homeostasis, and it is also a corresponding state of the organism’s nervous system (or the body in general). We hypothesized that chronic stress may be one of the causes occurence of several molecular and cellular types of stress. We analyzed literary sources and considered most of these types of stress in our review article. We examined genes and mutations of nuclear and mitochondrial genomes and also molecular variants which lead to various types of stress. The end result of chronic stress can be metabolic disturbance in humans and animals, leading to accumulation of reactive oxygen species (ROS), oxidative stress, energy deficiency in cells (due to a decrease in ATP synthesis) and mitochondrial dysfunction. These changes can last for the lifetime and lead to severe pathologies, including neurodegenerative diseases and atherosclerosis. The analysis of literature allowed us to conclude that under the influence of chronic stress, metabolism in the human body can be disrupted, mutations of the mitochondrial and nuclear genome and dysfunction of cells and their compartments can occur. As a result of these processes, oxidative, genotoxic, and cellular stress can occur. Therefore, chronic stress can be one of the causes forthe occurrence and development of neurodegenerative diseases and atherosclerosis. In particular, chronic stress can play a large role in the occurrence and development of oxidative, genotoxic, and cellular types of stress.