Assessment of the MODIS LAI product for Australian ecosystems

The leaf area index (LAI) product from the Moderate Resolution Imaging Spectroradiometer (MODIS) is important for monitoring and modelling global change and terrestrial dynamics at many scales. The algorithm relies on spectral reflectances and a six biome land cover classification. Evaluation of the specific behaviour and performance of the product for regions of the globe such as Australia are needed to assist with product refinement and validation. We made an assessment of Collection 4 of the MODIS LAI product using four approaches: (a) assessment against a continental scale Structural Classification of Australian Vegetation (SCAV); (b) assessment against a continental scale land use classification (LUC); (c) assessment against historical field-based measurement of LAI collected prior to the Terra Mission; and (d) direct comparison of MODIS LAI with coincident field measurements of LAI, mostly from hemispherical photography. The MODIS LAI product produced a wide variety of geographically and structurally specific temporal response profiles between different classes and even for sub-groups within classes of the SCAV. Historical and concurrent field measurements indicated that MODIS LAI was giving reasonable estimates for LAI for most cover types and land use types, but that major overestimation of LAI occurs in some eastern Australian open forests and woodlands. The six biome structural land cover classification showed some significant deviations in class allocation compared to the SCAV particularly where grasslands are allocated to shrubland, savanna woodlands are allocated to shrubland, savanna and broadleaf forest, and open forests are allocated to savanna and broadleaf forest. The land cover and LAI products could benefit from some additional examination of Australian data addressing the structural representation of Eucalypt canopies in the “space of canopy realisation” for savanna and broadleaf forest classes.     

Tracking sand dune migration in the Rub Al-Khali with ICESat laser altimetry

Sand dune migration poses serious environmental and social problems for both the infrastructure and communities in the Saudi Arabian Peninsula. In order to monitor and better understand dune migration, a new method is proposed to estimate sand dune displacement/migration by using satellite laser altimetry data from the ICESat mission in the Rub Al-Khali. This method will exploit not only the differences in the observed ICESat elevation profiles, but also the phase differences between two co-located tracks when observed at different times. By using the phase differences, the proposed method will be able to estimate dune displacement vectors with an accuracy of 5 m root mean square. This accuracy has been validated using synthetic data with known displacements. The major causes for dune migration are the wind regime and the type of dunes (e.g. grain size and vegetation cover). A comparison of estimated dune displacement correlated well with the prevailing wind regime during the observation time period. A comparison with satellite imagery revealed that the dune shape and direction (i.e. the representative parameters of dune migration) are in agreement with the estimated displacement vectors. This method represents one of the first attempts to monitor dune migration using space observations only.     

Gender differences and the effects of perceived internet privacy on self-reports of sexual behavior and sociosexuality

The use of the Internet for conducting research has found that the level of anonymity intrinsic to web-based surveys is useful in deterring various participant biases. Though, concerns about Internet privacy could interfere with the effects of perceived anonymity and influence how a person responds. In this study, participants were asked to take an Internet survey and then were randomly assigned to conditions with varying degrees of implied privacy in which they answered questions about their desire for casual sex (sociosexuality) and their lifetime sexual partners. Only in the condition without any threat to the participant’s anonymity was there no difference between men and women’s reports of their sexual behavior. However, in every condition men reported having a significantly higher sociosexuality than women. Findings are consistent with both the biologic and gender-biased explanations in differences of self-report for sexual information. Implications for social constraints and Internet based research are discussed.     

Defect cluster recognition system for fabricated semiconductor wafers

The International Technology Roadmap for Semiconductors (ITRS) identifies production test data as an essential element in improving design and technology in the manufacturing process feedback loop. One of the observations made from the high-volume production test data is that dies that fail due to a systematic failure have a tendency to form certain unique patterns that manifest as defect clusters at the wafer level. Identifying and categorising such clusters is a crucial step towards manufacturing yield improvement and implementation of real-time statistical process control. Addressing the semiconductor industry’s needs, this research proposes an automatic defect cluster recognition system for semiconductor wafers that achieves up to 95% accuracy (depending on the product type).     

Biomass production and small-scale testing of freeze-dried lactic acid bacteria starter strains for cassava fermentations

Based on their predominance in Gari fermentations, as well as suitable technological properties, Lactobacillus plantarum, Lactobacillus fermentum, Weissella paramesenteroides and Leuconostoc mesenteroides strains were investigated for their suitability for development as starter strains for this African traditional fermented cassava product. The strains were grown in optimized growth media in 2 L fermenters, harvested and freeze dried, and then tested in lab-scale cassava mash fermentation trials for their ability to ferment the cassava. The strains performed well and rapidly increased the titratable acidity from 1.1 to 1.3% at 24 h to 1.3–1.6% at 48 h. The benefit of including starter cultures was that it lowered the pH of the product much faster and to lower levels than in the uninoculated control fermentation. The results furthermore indicated that especially the L. plantarum-group strains could be produced as starter strains at low cost. Overall, the results of this study showed that starter strains could be easily and economically produced, and thus represent a feasible possibility for further development for application in the field.     

Dialysis patients treated with Epoetin α show improved exercise tolerance and physical function: A new analysis of the Canadian Erythropoietin Study Group trial

The risks/benefits of anemia treatment in dialysis patients have been redefined in the US Epoetin α label. This analysis was carried out to determine if increasing hemoglobin (Hb) levels improve exercise tolerance and physical function in anemic dialysis patients. This is a new analysis of the Canadian Erythropoietin Study Group trial, a double‐blind, randomized, placebo‐controlled trial in dialysis patients. Subjects were 18 to 75 years old, on hemodialysis for >3 months, and had a baseline Hb <9.0 g/dL. Patients with a history of diabetes mellitus, ischemic heart disease, or severe/uncontrolled hypertension were excluded. Patients were randomized to receive Epoetin α to a target Hb of 9.5 to 11.0 g/dL (n=40) or a target of 11.5 to 13.0 g/dL (n=38), or receive placebo (n=40). Results from patients in the Epoetin‐α–treated arms were combined for this analysis. Hb level, exercise tolerance (Treadmill Stress Test and 6‐Minute Walk Test) and patient‐reported physical function measures (Physical Summary domain from the Kidney Disease Questionnaire, and 4 domains from the Sickness Impact Profile) were reported at baseline and months 2, 4, and 6. Differences in measures were statistically significant for exercise tolerance (Treadmill Stress, P=0.0001) and patient‐reported physical function (Kidney Disease Questionnaire Physical, P=0.0001; Sickness Impact Profile Physical, P=0.0015) across all time points for Epoetin‐α–treated patients compared with placebo. Improvements were seen at 2 months and were maintained through months 4 and 6. Dialysis patients receiving Epoetin α showed improved exercise tolerance and physical function. These findings should be considered as physicians weigh the risks and benefits of treatment.     

Development and validation of a new LC–MS/MS method for the simultaneous determination of six major ergot alkaloids and their corresponding epimers. Application to some food and feed commodities

A liquid chromatography–tandem mass spectrometry (LC–MS/MS) method was developed and validated for the simultaneous determination of six major ergot alkaloids, ergometrine, ergosine, ergotamine, ergocornine, ergokryptine and ergocristine, as well as their corresponding epimers in food and feed samples. The method involves extraction under alkaline conditions and subsequent clean-up by applying a simple and rapid liquid–liquid partitioning procedure prior to LC–MS/MS analysis. Evaluation of the method revealed good linearity, accuracy and precision. The limits of quantification varied from 0.1 to 1 μg/kg depending on the analyte and matrix. The average extraction and clean-up recoveries in different matrices were between 45 (only for ergometrine in biscuit) and 90%. The uncertainty associated with the analytical method was not higher than 51% and 30%, at concentration levels of 2.5 and 150 μg/kg respectively. Analyte epimerization proved to be minimal during the analytical procedure. The method has been successfully applied to the determination of ergot alkaloids in some Belgian food and feed commodities. Ergot alkaloids were found in 104 out of 122 samples investigated. Ergosine was the most frequently occurring alkaloid, while the highest levels were observed for ergotamine, ergocristine or ergosine, depending on the product type. The total alkaloid content in positive samples varied from 1 to 1145 μg/kg.     

Enterococci as probiotics and their implications in food safety

Enterococci belong to the lactic acid bacteria (LAB) and they are of importance in foods due to their involvement in food spoilage and fermentations, as well as their utilisation as probiotics in humans and slaughter animals. However, they are also important nosocomial pathogens that cause bacteraemia, endocarditis and other infections. Some strains are resistant to many antibiotics and possess virulence factors such as adhesins, invasins, pili and haemolysin. The role of enterococci in disease has raised questions on their safety for use in foods or as probiotics. Studies on the incidence of virulence traits among enterococcal strains isolated from food showed that some can harbour virulence traits, but it is also thought that virulence is not the result of the presence of specific virulence determinants alone, but is rather a more intricate process. Specific genetic lineages of hospital-adapted strains have emerged, such as E. faecium clonal complex (CC) 17 and E. faecalis CC2, CC9, CC28 and CC40, which are high risk enterococcal clonal complexes. These are characterised by the presence of antibiotic resistance determinants and/or virulence factors, often located on pathogenicity islands or plasmids. Mobile genetic elements thus are considered to play a major role in the establishment of problematic lineages. Although enterococci occur in high numbers in certain types of fermented cheeses and sausages, they are not deliberately added as starter cultures. Some E. faecium and E. faecalis strains are used as probiotics and are ingested in high numbers, generally in the form of pharmaceutical preparations. Such probiotics are administered to treat diarrhoea, antibiotic-associated diarrhoea or irritable bowel syndrome, to lower cholesterol levels or to improve host immunity. In animals, enterococcal probiotics are mainly used to treat or prevent diarrhoea, for immune stimulation or to improve growth. From a food microbiological point of view, the safety of the bacteria used as probiotics must be assured, and data on the major strains in use so far indicate that they are safe. The advantage of use of probiotics in slaughter animals, from a food microbiological point of view, lies in the reduction of zoonotic pathogens in the gastrointestinal tract of animals which prevents the transmission of these pathogens via food. The use of enterococcal probiotics should, in view of the development of problematic lineages and the potential for gene transfer in the gastrointestinal tract of both humans and animals, be carefully monitored, and the advantages of using these and new strains should be considered in a well contemplated risk/benefit analysis.     

Co-optimization of color and mechanical properties by volumetric voxel control

Structural and Multidisciplinary Optimization - Controlling the composition of individual voxels allows for a co-optimization of 3D-printed part properties such as color and mechanical ones. As a...     

Nitroreductase-Mediated Release of Inhibitors of Lysine-Specific Demethylase 1 (LSD1) from Prodrugs in Transfected Acute Myeloid Leukaemia Cells

Lysine-specific demethylase 1 (LSD1) has evolved as a promising therapeutic target for cancer treatment, especially in acute myeloid leukaemia (AML). To approach the challenge of site-specific LSD1 inhibition, we developed an enzyme-prodrug system with the bacterial nitroreductase NfsB (NTR) that was expressed in the virally transfected AML cell line THP1-NTR⁺. The cellular activity of the NTR was proven with a new luminescent NTR probe. We synthesised a diverse set of nitroaromatic prodrugs that by design do not affect LSD1 and are reduced by the NTR to release an active LSD1 inhibitor. The emerging side products were differentially analysed using negative controls, thereby revealing cytotoxic effects. The 2-nitroimidazolyl prodrug of a potent LSD1 inhibitor emerged as one of the best prodrug candidates with a pronounced selectivity window between wild-type and transfected THP1 cells. Our prodrugs are selectively activated and release the LSD1 inhibitor locally, proving their suitability for future targeting approaches.