A neuron membrane mesh representation for visualization of electrophysiological simulations

We present a process to automatically generate three-dimensional mesh representations of the complex, arborized cell membrane surface of cortical neurons (the principal information processing cells of the brain) from nonuniform morphological measurements. Starting from manually sampled morphological points (3D points and diameters) from neurons in a brain slice preparation, we construct a polygonal mesh representation that realistically represents the continuous membrane surface, closely matching the original experimental data. A mapping between the original morphological points and the newly generated mesh enables simulations of electrophysiolgical activity to be visualized on this new membrane representation. We compare the new mesh representation with the state of the art and present a series of use cases and applications of this technique to visualize simulations of single neurons and networks of multiple neurons.     

Action recognition via bio-inspired features: The richness of center–surround interaction

Motion is a key feature for a wide class of computer vision approaches to recognize actions. In this article, we show how to define bio-inspired features for action recognition. To do so, we start from a well-established bio-inspired motion model of cortical areas V1 and MT. The primary visual cortex, designated as V1, is the first cortical area encountered in the visual stream processing and early responses of V1 cells consist in tiled sets of selective spatiotemporal filters. The second cortical area of interest in this article is area MT where MT cells pool incoming information from V1 according to the shape and characteristic of their receptive field. To go beyond the classical models and following the observations from Xiao et al. [61], we propose here to model different surround geometries for MT cells receptive fields. Then, we define the so-called bio-inspired features associated to an input video, based on the average activity of MT cells. Finally, we show how these features can be used in a standard classification method to perform action recognition. Results are given for the Weizmann and KTH databases. Interestingly, we show that the diversity of motion representation at the MT level (different surround geometries), is a major advantage for action recognition. On the Weizmann database, the inclusion of different MT surround geometries improved the recognition rate from 63.01 ± 2.07% up to 99.26 ± 1.66% in the best case. Similarly, on the KTH database, the recognition rate was significantly improved with the inclusion of MT different surround geometries (from 47.82 ± 2.71% up to 92.44 ± 0.01% in the best case). We also discussed the limitations of the current approach which are closely related to the input video duration. These promising results encourage us to further develop bio-inspired models incorporating other brain mechanisms and cortical areas in order to deal with more complex videos.     

Evaluating the influence of multiplexing schemes and buffer implementation on perceived VoIP conversation quality

This work presents a study of RTP multiplexing schemes, which are compared with the normal use of RTP, in terms of experienced quality. Bandwidth saving, latency and packet loss for different options are studied, and some tests of Voice over IP (VoIP) traffic are carried out in order to compare the quality obtained using different implementations of the router buffer. Voice quality is calculated using ITU R-factor, which is a widely accepted quality estimator. The tests show the bandwidth savings of multiplexing, and also the importance of packet size for certain buffers, as latency and packet loss may be affected. The customer’s experience improvement is measured, showing that the use of multiplexing can be interesting in some scenarios, like an enterprise with different offices connected via the Internet. The system is also tested using different numbers of samples per packet, and the distribution of the flows into different tunnels is found to be an important factor in order to achieve an optimal perceived quality for each kind of buffer. Grouping all the flows into a single tunnel will not always be the best solution, as the increase of the number of flows does not improve bandwidth efficiency indefinitely. If the buffer penalizes big packets, it will be better to group the flows into a number of tunnels. The router processing capacity has to be taken into account too, as the limit of packets per second it can manage must not be exceeded. The obtained results show that multiplexing is a good way to improve customer’s experience of VoIP in scenarios where many RTP flows share the same path.     

Confidence voting method ensemble applied to off-line signature verification

In this paper, a new approximation to off-line signature verification is proposed based on two-class classifiers using an expert decisions ensemble. Different methods to extract sets of local and a global features from the target sample are detailed. Also a normalization by confidence voting method is used in order to decrease the final equal error rate (EER). Each set of features is processed by a single expert, and on the other approach proposed, the decisions of the individual classifiers are combined using weighted votes. Experimental results are given using a subcorpus of the large MCYT signature database for random and skilled forgeries. The results show that the weighted combination outperforms the individual classifiers significantly. The best EER obtained were 6.3 % in the case of skilled forgeries and 2.31 % in the case of random forgeries.     

Towards practical anisotropic adaptive FEM on triangular meshes: a new refinement paradigm

Adaptive anisotropic refinement of finite element meshes allows one to reduce the computational effort required to achieve a specified accuracy of the solution of a PDE problem. We present a new approach to adaptive refinement and demonstrate that this allows one to construct algorithms which generate very flexible and efficient anisotropically refined meshes, even improving the convergence order compared to adaptive isotropic refinement if the problem permits.     

Model-based testing of software and systems: recent advances and challenges

Model-based testing is focused on testing techniques which rely on the use of models. The diversity of systems and software to be tested implies the need for research on a variety of models and methods for test automation. We briefly review this research area and introduce several papers selected from the 22nd International Conference on Testing Software and Systems (ICTSS).     

The GPU on the simulation of cellular computing models

Membrane Computing is a discipline aiming to abstract formal computing models, called membrane systems or P systems, from the structure and functioning of the living cells as well as from the cooperation of cells in tissues, organs, and other higher order structures. This framework provides polynomial time solutions to NP-complete problems by trading space for time, and whose efficient simulation poses challenges in three different aspects: an intrinsic massively parallelism of P systems, an exponential computational workspace, and a non-intensive floating point nature. In this paper, we analyze the simulation of a family of recognizer P systems with active membranes that solves the Satisfiability problem in linear time on different instances of Graphics Processing Units (GPUs). For an efficient handling of the exponential workspace created by the P systems computation, we enable different data policies to increase memory bandwidth and exploit data locality through tiling and dynamic queues. Parallelism inherent to the target P system is also managed to demonstrate that GPUs offer a valid alternative for high-performance computing at a considerably lower cost. Furthermore, scalability is demonstrated on the way to the largest problem size we were able to run, and considering the new hardware generation from Nvidia, Fermi, for a total speed-up exceeding four orders of magnitude when running our simulations on the Tesla S2050 server.     

Risk in Transport Investments

We discuss how the standard Cost-Benefit Analysis should be modified in order to take risk (and uncertainty) into account. We propose different approaches used in finance (Value at Risk, Conditional Value at Risk, Downside Risk Measures, and Efficiency Ratio) as useful tools to model the impact of risk in project evaluation. After introducing the concepts, we show how they could be used in CBA and provide some simple examples to illustrate how such concepts can be applied to evaluate the desirability of a new project infrastructure.     

A microbiological survey of fresh meat in the supermarket trade. Part 2: beef retail cuts

An assessment was made of the microbiological quality of the final product (different retail cuts), produced by two different retail supermarket groups (A & B). The influence of sanitary conditions on the microbiological quality of the final product was evaluated, and the possible influences on shelf life were determined. Supermarket group A (Sup group A) received carcasses with significantly lower surface counts of micro-organisms than supermarket group B (Sup group B), while the latter had a more efficient overall sanitation programme than supermarket group A. Five cuts were monitored for the presence of total aerobic counts, psychrotrophic counts, lactobacilli, Enterobacteriaceae and numbers of Pseudomonadaceae present. A shelf life study was also executed by repeating these enumerations on the same meat samples after refrigerated storage at 5°C for 2 and 4 days, respectively. It is generally accepted that a good refrigeration or chilling regime will preserve the inherent meat quality, but in this study it was found that neither served as a guarantee of quality. The more stringent hygiene at retail level of Sup group B yielded consistently lower mean counts of the different bacterial groups for all the meat cuts monitored and, thus meat with an extended shelf life. The total count (at 30°C) on meat cuts was the highest, followed by the psychrotrophs, the Pseudomonadaceae the Enterobacteriaeae and the lactobacilli. Minced meat generally had the highest mean aerobic total microbial counts. This count on minced meat might be a suitable indicator for monitoring the overall sanitary condition of a retail premises. The results re-emphasized the multi-factorial complexity of fresh meat quality and shelf life. The microbial quality of the raw material (carcasses), the maintenance of the cold chain, sanitary condition of premises, equipment and personnel surfaces and general management practices are factors that collectively determine the microbiological quality of the product.     

The influence of different centralised pre-packaging systems on the shelf-life of fresh pork

The influence of different centralised pre-packaging systems (PVC, modified atmosphere packaging (MAP), 25% CO(2) and 75% O(2), vacuum skin packaging (VSP) and the mother bag concept, 100% CO(2)) on the shelf-life (0, 7, 14 and 21 days at 0°C) of fresh pork was determined using microbiological, colour, odour and acceptability characteristics. All the packaging treatments were equally efficient for the first 4 days of retail display. In the extended shelf-life study (7, 14 and 21 days) the mother bag centralised packaging system gave the most promising shelf-life results (21 days) and was also judged superior in terms of odour. Modified atmosphere packaging (14 days) and VSP (7 days) may be considered as other possible options.