SAPPHIRE: A toolkit for building efficient stream programs for medical video analysis

This paper describes the design and implementation of SAPPHIRE – a novel middleware and software development kit for stream programing on a heterogeneous system of multi-core multi-CPUs with optional hardware accelerators such as graphics processing unit (GPU). A stream program consists of a set of tasks where the same tasks are repeated over multiple iterations of data (e.g., video frames). Examples of such programs are video analysis applications for computer-aided diagnosis and computer-assisted surgeries. Our design goal is to reduce the implementation efforts and ease collaborative software development of stream programs while supporting efficient execution of the programs on the target hardware. To validate the toolkit, we implemented EM-Automated-RT software with the toolkit and reported our experience. EM-Automated-RT performs real-time video analysis for quality of a colonoscopy procedure and provides visual feedback to assist the endoscopist to achieve optimal inspection of the colon during the procedure. The software has been deployed in a hospital setting to conduct a clinical trial.     

Environmental and individual exposure to secondhand aerosol of electronic cigarettes in confined spaces: Results from the TackSHS Project†

Secondhand electronic cigarette (e-cigarette) aerosol (SHA) might impair indoor air quality and expose bystanders. This study aims to investigate exposure to SHA in controlled conditions of enclosed settings simulating real-world scenario. An experiment was performed in a car and in a room, in which SHA was generated during a 30-minute ad libitum use of an e-cigarette. The experiment was replicated on five consecutive days in each setting. We measured PM_2.5, airborne nicotine concentrations, and biomarkers of exposure to SHA, such as nicotine metabolites, tobacco-specific nitrosamines, propylene glycol, and glycerol in bystanders’ saliva samples before, during, and after the exposure period. Self-reported health symptoms related to exposure to SHA were also recorded. The results showed that the highest median PM_2.5 concentration was recorded during the exposure period, being 21 µg/m³ in the room setting and 16 µg/m³ in the car setting—about twofold increase compared to the baseline. Most concentrations of the airborne nicotine and all biomarkers were below the limit of quantification in both settings. Bystanders in both settings experienced some short-term irritation symptoms, expressed as dry throat, nose, eyes, and phlegm. In conclusion, short-term use of an e-cigarette in confined spaces increased indoor PM_2.5 level and caused some irritation symptoms in bystanders.     

Probing the Substrate Promiscuity of Isopentenyl Phosphate Kinase as a Platform for Hemiterpene Analogue Production

Isoprenoids are a large class of natural products with wide-ranging applications. Synthetic biology approaches to the manufacture of isoprenoids and their new-to-nature derivatives are limited due to the provision in nature of just two hemiterpene building blocks for isoprenoid biosynthesis. To address this limitation, artificial chemo-enzymatic pathways such as the alcohol-dependent hemiterpene (ADH) pathway serve to leverage consecutive kinases to convert exogenous alcohols into pyrophosphates that could be coupled to downstream isoprenoid biosynthesis. To be successful, each kinase in this pathway should be permissive of a broad range of substrates. For the first time, we have probed the promiscuity of the second enzyme in the ADH pathway—isopentenyl phosphate kinase from Thermoplasma acidophilum—towards a broad range of acceptor monophosphates. Subsequently, we evaluate the suitability of this enzyme to provide unnatural pyrophosphates and provide a critical first step in characterizing the rate-limiting steps in the artificial ADH pathway.     

A Symmetrical Diester as the Sex Attractant Pheromone of the North American Click Beetle Parallelostethus attenuatus (Say) (Coleoptera: Elateridae)

Hexanoic acid, 1-octanol, 1,8-octanediol, octyl hexanoate, 1,8-octanediol monohexanoate, and 1,8-octanediol dihexanoate were identified in headspace volatiles collected from the crushed abdomen of a female click beetle of the species Parallelostethus attenuatus (Say) (Elaterinae, tribe Elaterini). In field trials carried out in Illinois, South Carolina, North Carolina, and Virginia, adult male beetles were strongly attracted to 1,8-octanediol dihexanoate alone. Blends of the dihexanoate with one or more of the other compounds proved to be less attractive than the dihexanoate alone, suggesting that the pheromone of this species may consist of a single compound. The symmetrical diester structure of the pheromone is a novel natural product and appears to be structurally unique among insect pheromones.

     

Rapid microwave synthesis of the iron arsenides NdFeAsO and NdFe0.9Co0.1AsO

The future of iron pnictide superconductors in technology is still undecided. While these materials are now known to possess relatively high critical temperatures and critical magnetic fields, processing methods for these superconductors are still in the development stage. Recently we have been investigating possible ways to speed up the synthetic process for obtaining polycrystalline iron arsenide superconductors and other transition metal pnictides. Here we report the synthesis of NdFeAsO and NdFe_0.9Co_0.1AsO in less than 1 h total exposure to microwave radiation using an additional microwave susceptor to surround the reaction ampoule. Structure and property measurements reveal the samples to be of high quality and superconducting when Co doped.     

Macro- and microscale variables regulate stent haemodynamics,fibrin deposition and thrombomodulin expression

Drug eluting stents are associated with late stent thrombosis (LST), delayed healing and prolonged exposure of stent struts to blood flow. Using macroscale disturbed and undisturbed fluid flow waveforms, we numerically and experimentally determined the effects of microscale model strut geometries upon the generation of prothrombotic conditions that are mediated by flow perturbations. Rectangular cross-sectional stent strut geometries of varying heights and corresponding streamlined versions were studied in the presence of disturbed and undisturbed bulk fluid flow. Numerical simulations and particle flow visualization experiments demonstrated that the interaction of bulk fluid flow and stent struts regulated the generation, size and dynamics of the peristrut flow recirculation zones. In the absence of endothelial cells, deposition of thrombin-generated fibrin occurred primarily in the recirculation zones. When endothelium was present, peristrut expression of anticoagulant thrombomodulin (TM) was dependent on strut height and geometry. Thinner and streamlined strut geometries reduced peristrut flow recirculation zones decreasing prothrombotic fibrin deposition and increasing endothelial anticoagulant TM expression. The studies define physical and functional consequences of macro- and microscale variables that relate to thrombogenicity associated with the most current stent designs, and particularly to LST.     

Mg2FeH6–LiBH4 and Mg2FeH6–LiNH2 composite materials for hydrogen storage

Two composite hydrogen storage materials based on Mg₂FeH₆ were investigated for the first time. The Mg₂FeH₆–LiBH₄ composite of molar ratio 1:5 showed a hydrogen desorption capacity of 5.6 wt.% at 370 °C, and could be rehydrogenated to 3.6 wt.% with the formation of MgH₂, as the material was heated to 445 °C and held at this temperature. The Mg₂FeH₆–LiNH₂ composite of 3:10 molar ratio exhibited a hydrogen desorption capacity of 4.3 wt.% and released hydrogen at 100 °C lower then the Mg₂FeH₆–LiBH₄ composite, but this mixture could not be rehydrogenated. Compared to neat Mg₂FeH₆, both composites show enhanced hydrogen storage properties in terms of desorption kinetics and capacity at these low temperatures. In particular, Mg₂FeH₆–LiNH₂ exhibits a much lower desorption temperature than neat Mg₂FeH₆, but only Mg₂FeH₆–LiBH₄ re-absorbs hydrogen.