Estimation of Growth Curve Models with Structured Error Covariances by Generalized Estimating Equations

The growth curve model is useful for the analysis of longitudinal data. It helps investigate an overall pattern of change in repeated measurements over time and the effects of time-invariant explanatory variables on the temporal pattern. The traditional growth curve model assumes that the matrix of covariances between repeated measurements is unconstrained. This unconstrained covariance matrix often appears unattractive. In this paper, the generalized estimating equation method is adopted to estimate parameters of the growth curve model. As a result, the proposed method allows a more variety of constrained covariance structures than the traditional growth curve model. An empirical application is provided so as to illustrate the proposed method.

     

Question hard, answer simply: A comment on Storms et al. (2003).

It seems clear that, for whatever reasons, the dementia of the Alzheimer type patient group (as well as other patient groups) exhibits behavior that is different from the normal control group. G. Storms, T. Dirikx, J. Saerens, S. Verstraeten, and P. P. De Deyn (2003) rightfully argue that the observed behavior (similarity judgments) does not tell us the source (cause) of the differences between the 2 groups. Rather, the focus of the study should be placed more on finding the ways the 2 groups are different. They also point out various methodological problems in some of the previous attempts to characterize the nature of the differences. Further methodological issues in G. Storms et al.'s study are examined. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Effects of free radical scavengers on cytokine actions on islet cells

We investigated the effect of free radical scavengers on the actions of cytokines on islet cells. Interferon-gamma and tumor necrosis factor-alpha reduced the nicotinamide adenine dinucleotide content of mouse islet cells; the combination of interferon-gamma (4 x 10(5) U/l) and tumor necrosis factor-alpha (4 x 10(5) U/l) caused nicotinamide adenine dinucleotide reduction by approximately 40%. Dimethyl urea and dimethyl sulfoxide prevented the decrease, whereas superoxide dismutase, catalase, and mannitol were not effective. Dimethyl urea and dimethyl sulfoxide protected islet cells from the synergistic cytotoxic action of interferon-gamma and tumor necrosis factor-alpha. Major histocompatibility complex class II antigen induction by interferon-gamma and tumor necrosis factor-alpha was also inhibited by dimethyl urea and dimethyl sulfoxide, but not by superoxide dismutase, catalase and mannitol. Since superoxide dismutase of a membrane-penetrable form attenuated the class II antigen induction, the inefficiency of superoxide dismutase, catalase and mannitol may be attributable to their inability to penetrate islet cells. These results suggest that the intracellular generation of free oxygen radicals is involved in islet cell cytotoxicity and class II molecule expression by interferon-gamma and tumor necrosis factor-alpha, and that nicotinamide adenine dinucleotide reduction may be associated with islet cell dysfunction caused by the cytokines.     

Brefeldin A protects ricin-induced cytotoxicity in human cancer KB cell line, but not in its resistant counterpart with altered Golgi structures

Brefeldin A (BFA), an isoprenoid fungal metabolite, dramatically disrupts intracellular protein transport and protein secretion. BFA protects cells from the cytotoxicity of a plant toxin, ricin or pseudomonas toxin, but not that of diphtheria toxin (Yoshida et al., 1991. Expt. Cell Res., 192: 389-395.). In this study, we examined whether BFA could differentially change the cytotoxicity of ricin between BFA-sensitive cells and BFA-resistant cells. As a BFA-resistant cell line, we used a resistant cell line, KB/BF2-2, derived from BFA-sensitive human cancer KB cells. BFA treatment caused the disappearance of typical Golgi cisternae and the concomitant appearance of dilated vesicles in the cytoplasm in KB cells. By contrast, KB/BF2-2 cells had already altered Golgi structures with poor development of cisternae and also many vesicles in the absence of BFA, and BFA treatment did not further induce the morphological changes. Although a plasma membrane-specific marker protein, alpha-adaptin, was localized similarly in KB/BF2-2 as KB, Golgi specific markers such as beta-cop and gamma-adaptin were distributed in the cytoplasmic small vesicles as well as Golgi compartments in KB/BF2-2 cells in the absence of BFA, and the mutant cells showed no apparent changes in the distribution even when exposed to BFA. Ricin inhibited protein synthesis in KB and KB/BF2-2 to similar levels while pretreatment of KB cells with BFA at 0.1 microgram/ml almost completely reversed the inhibitory effect of ricin. By contrast, the pre-exposure of KB/BF2-2 cells to 1.0 microgram/ml BFA only partially rescued the ricin-induced inhibition of protein synthesis. Exposure to BFA at 30 min before ricin addition or at 0 min with ricin rescued the protein synthesis inhibition, but no rescue occurred when BFA was added 30 min after ricin addition. BFA could not rescue the protein synthesis inhibition by another toxin, diphtheria toxin. Our results suggest that BFA-resistant mutation causes a specific change in the endocytic membrane traffic of ricin in human cells, and also that cytotoxicity of diphtheria toxin does not share a common pathway of the intracellular transport with that of ricin.     

Responses of trabecular and cortical bone turnover and bone mass and strength to bisphosphonate YH529 in ovariohysterectomized beagles with calcium restriction

Thirty-six beagles, 18 months of age, underwent ovariohysterectomy (OHX) or a sham operation. Sham-operated animals were given a diet with standard calcium (1.4%) (group 1, n = 6) or a restricted calcium diet (0.14%) (group 2, n = 6). The OHX animals were given the restricted calcium diet and YH529 orally with respective daily doses of 0, 0.02, 0.1, and 0.5 mg/kg of body weight (groups 3-6, n = 6 each) for 12 months. At the end of this period, the lumbar bone mineral densities (BMDs) in groups 2 and 3 and the load values for group 3 were significantly smaller than those for group 1. The midfemur BMD did not differ among the groups. The urinary deoxypyridinoline (U-Dpy) and bone formation rates (BFR/BS, BFR/BV) in groups 2 and 3 and the osteonal BFR/BS and trabecular osteoclast number (Oc.N/BS) in group 3 were significantly larger than the respective values for group 1. However, these parameters did not significantly differ between groups 2 and 3. The serum osteocalcin (OC) level, wall thickness (W.Th), and mineral apposition rate values for group 3 were significantly larger than those for group 2. In group 2, the trabecular activation frequency (Ac.F) increased by 3.11 times, and the percent values of the number of labeled osteons (L-Ot.N/T-Ot.N, %) in the tibia by 3.28 times over those for group 1. In group 3, the Ac.F increased by 3.20 times and the number of labeled osteons by 3.77 times over those for group 1. In groups 4-6, the U-Dpy and Oc.N/BS values were smaller, but their OC levels did not significantly differ from the level for group 3. The lumbar BMD, the load, and W.Th were dose-dependently significantly larger than those for group 3. The Ac.F values were significantly smaller, and the respective value in groups 4-6 was 67.9, 25.5, and 10.2% of that in group 3. The BMDs of the midfemur in groups 4-6 were significantly larger than those in group 3, but the ultimate load values did not significantly differ. The L-Ot.N/T-Ot.N values were also significantly smaller, and the respective value in groups 4-6 was 82.0, 48.5, and 55.2% of that in group 3. The tibial endocortical and periosteal BFR/BSs did not differ significantly. These data demonstrate that the effects of OHX on bone mass and turnover were small in the beagles fed a restricted calcium diet. YH529 maintained the mass and strength of the lumbar bone by reducing the bone resorption. The cortical bone appeared to be less sensitive to the agent than the trabecular bone in this animal model.     

Edge effect on electronic transport properties of graphene nanoribbons and presence of perfectly conducting channel

Numerical calculations have been performed to elucidate unconventional electronic transport properties in disordered nanographene ribbons with zigzag edges (zigzag ribbons). The energy band structure of zigzag ribbons has two valleys that are well separated in momentum space, related to the two Dirac points of the graphene spectrum. The partial flat bands due to edge states make the imbalance between left- and right-going modes in each valley, i.e. appearance of a single chiral mode. This feature gives rise to a perfectly conducting channel in the disordered system, i.e. the average of conductance 〈g〉 converges exponentially to 1 conductance quantum per spin with increasing system length, provided impurity scattering does not connect the two valleys, as is the case for long-range impurity potentials. Ribbons with short-range impurity potentials, however, through inter-valley scattering, display ordinary localization behavior. Symmetry considerations lead to the classification of disordered zigzag ribbons into the unitary class for long-range impurities, and the orthogonal class for short-range impurities. The electronic states of graphene nanoribbons with general edge structures are also discussed, and it is demonstrated that chiral channels due to the edge states are realized even in more general edge structures except for armchair edges.     

Comparative study of high-power pulsed sputtering (HPPS) glow plasma techniques using Penning discharge and hollow-cathode discharge

Plasma-ion processing enhances the functionality of films used in various industrial and life-science fields, where high-efficiency metal-plasma sources are indispensable for facilitating this process. In this paper, a new sputtering plasma source is proposed. The plasma source is called high-power pulsed sputtering (HPPS) plasma; more than 10 kW of electric power is easily consumed in the plasma despite its compact size. The characteristics are compared with those of a hollow-cathode discharge (HCD) in the same source configuration. In the case of HPPS plasma generated in a magnetic field, the plasma is confined in the magnetic field and as much as 8 kW of power is consumed. When a set of permanent magnets are removed, the plasma changes from a confined state to an expanded state. Thus, a hollow-cathode discharge plasma is generated. As a result, efficient sputtering of the target material ceases; the consumed power decreases to approximately 20% of that of HPPS plasma, which causes the power density to decrease to 5%. The metallic components observed in the optical emission spectrum are significantly less common in the HCD plasma. In the HPPS plasma, the contributions to the optical emission spectrum from titanium- and argon-related species are significant, while no specified emissions are detected in the HCD plasma. Based on the optical emission spectrum intensity, the activated titanium species are not uniformly distributed at the gap. Some parts of the species are commonly on the outer edge of the target, while the argon species are relatively uniformly distributed in the plasma region.     

Insight into the Effect of Dendrimer Structure on Photoluminescence from Assembled Bismuth Complexes

Our previous report demonstrated the fabrication and functionalization of the luminous dendrimer based on phenylazomethine-BiCl₃ complexes (Kambe et al. in Angew Chem Int Ed 55:13151, 2016). It is now revealed that the bismuth assembled phenylazomethine dendrimers have different luminous efficiencies depending on the layers of the DPAG4 by photoemission and absorption spectroscopy.     

How does heme axial ligand deletion affect the structure and the function of cytochrome b562?

We have recently generated a new mutant of cytochrome b₅₆₂ (cytb₅₆₂)in which Met7, one of the axial heme ligands, is replaced byAla (M7A cytb₅₆₂). The M7A cytb₅₆₂ can bind heme and the UV-visibleabsorption spectrum is of a typical high-spin ferric heme. Toinvestigate the effect of the lack of Met7 ligation on the structuralintegrity of cytb₅₆₂, thermal transition analyses of M7A cytb₅₆₂were conducted. From the thermodynamic parameters obtained,it is concluded that the folding of M7A cytb₅₆₂ is comparableto the apoprotein despite the presence of heme. On the otherhand, exogenous ligands such as cyanide and azide ions are readilybound to the heme iron, indicating that the axial coordinationsite is available for substrate binding. The peroxidase activityof this mutant is thus examined to evaluate new enzymatic functionat this site and M7A cytb₅₆₂ was found to catalyze an oxidationreaction of aromatic substrates with hydrogen peroxide. Theseobservations demonstrate that the Met7/His102 bis-ligation tothe heme iron is crucial for the stable folding of cytb₅₆₂,whereas the functional conversion of cytb₅₆₂ is successfullyachieved by the loose folding together with the open coordinationsite.