Massively parallel acceleration of a document-similarity classifier to detect web attacks

This paper describes our approach to adapting a text document similarity classifier based on the Term Frequency Inverse Document Frequency (TFIDF) metric to two massively multi-core hardware platforms. The TFIDF classifier is used to detect web attacks in HTTP data. In our parallel hardware approaches, we design streaming, real time classifiers by simplifying the sequential algorithm and manipulating the classifier’s model to allow decision information to be represented compactly. Parallel implementations on the Tilera 64-core System on Chip and the Xilinx Virtex 5-LX FPGA are presented. For the Tilera, we employ a reduced state machine to recognize dictionary terms without requiring explicit tokenization, and achieve throughput of 37 MB/s at a slightly reduced accuracy. For the FPGA, we have developed a set of software tools to help automate the process of converting training data to synthesizable hardware and to provide a means of trading off between accuracy and resource utilization. The Xilinx Virtex 5-LX implementation requires 0.2% of the memory used by the original algorithm. At 166 MB/s (80X the software) the hardware implementation is able to achieve Gigabit network throughput at the same accuracy as the original algorithm.     

Effects of soil composition and mineralogy on remote sensing of crop residue cover

The management of crop residues (non-photosynthetic vegetation) in agricultural fields influences soil erosion and soil carbon sequestration. Remote sensing methods can efficiently assess crop residue cover and related tillage intensity over many fields in a region. Although the reflectance spectra of soils and crop residues are often similar in the visible, near infrared, and the lower part of the shortwave infrared (400-1900 nm) wavelength region, specific diagnostic chemical absorption features are evident in the upper shortwave infrared (1900-2500 nm) region. Two reflectance band height indices used for estimating residue cover are the Cellulose Absorption Index (CAI) and the Lignin-Cellulose Absorption (LCA) index, both of which use reflectances in the upper shortwave infrared (SWIR). Soil mineralogy and composition will affect soil spectral properties and may limit the usefulness of these spectral indices in certain areas. Our objectives were to (1) identify minerals and soil components with absorption features in the 2000 nm to 2400 nm wavelength region that would affect CAI and LCA and (2) assess their potential impact on remote sensing estimates of crop residue cover. Most common soil minerals had CAI values ≤ 0.5, whereas crop residues were always > 0.5, allowing for good contrast between soils and residues. However, a number of common soil minerals had LCA values > 0.5, and, in some cases, the mineral LCA values were greater than those of the crop residues, which could limit the effectiveness of LCA for residue cover estimation. The LCA of some dry residues and live corn canopies were similar in value, unlike CAI. Thus, the Normalized Difference Vegetation Index (NDVI) or similar method should be used to separate out green vegetation pixels. Mineral groups, such as garnets and chlorites, often have wide ranges of CAI and LCA values, and thus, mineralogical analyses often do not identify individual mineral species required for precise CAI estimation. However, these methods are still useful for identifying mineral soils requiring additional scrutiny. Future advanced multi- and hyperspectral remote sensing platforms should include CAI bands to allow for crop residue cover estimation.     

Utility of an image-based canopy reflectance modeling tool for remote estimation of LAI and leaf chlorophyll content at the field scale

This paper presents a physically-based approach for estimating critical variables describing land surface vegetation canopies, relying on remotely sensed data that can be acquired from operational satellite sensors. The REGularized canopy reFLECtance (REGFLEC) modeling tool couples leaf optics (PROSPECT), canopy reflectance (ACRM), and atmospheric radiative transfer (6SV1) model components, facilitating the direct use of at-sensor radiances in green, red and near-infrared wavelengths for the inverse retrieval of leaf chlorophyll content (C_ab) and total one-sided leaf area per unit ground area (LAI). The inversion of the canopy reflectance model is constrained by assuming limited variability of leaf structure, vegetation clumping, and leaf inclination angle within a given crop field and by exploiting the added radiometric information content of pixels belonging to the same field. A look-up-table with a suite of pre-computed spectral reflectance relationships, each a function of canopy characteristics, soil background effects and external conditions, is accessed for fast pixel-wise biophysical parameter retrievals. Using 1 m resolution aircraft and 10 m resolution SPOT-5 imagery, REGFLEC effectuated robust biophysical parameter retrievals for a corn field characterized by a wide range in leaf chlorophyll levels and intermixed green and senescent leaf material. Validation against in-situ observations yielded relative root-mean-square deviations (RMSD) on the order of 10% for the 1 m resolution LAI (RMSD = 0.25) and C_ab (RMSD = 4.4 μg cm^− 2) estimates, due in part to an efficient correction for background influences. LAI and C_ab retrieval accuracies at the SPOT 10 m resolution were characterized by relative RMSDs of 13% (0.3) and 17% (7.1 μg cm^− 2), respectively, and the overall intra-field pattern in LAI and C_ab was well established at this resolution. The developed method has utility in agricultural fields characterized by widely varying distributions of model variables and holds promise as a valuable operational tool for precision crop management. Work is currently in progress to extend REGFLEC to regional scales.     

The logic of message-passing

Message-passing is a key ingredient of concurrent programming. The purpose of this paper is to describe the equivalence between the proof theory, the categorical semantics, and term calculus of message-passing. In order to achieve this we introduce the categorical notion of a linear actegory and the related polycategorical notion of a poly-actegory. Not surprisingly the notation used for the term calculus borrows heavily from the (synchronous) π-calculus. The cut-elimination procedure for the system provides an operational semantics.     

Comparison of bathymetry and seagrass mapping with hyperspectral imagery and airborne bathymetric lidar in a shallow estuarine environment

We compared hyperspectral imagery and single-wavelength airborne bathymetric light detection and ranging (lidar) for shallow water (<2 m) bathymetry and seagrass mapping. Both the bathymetric results from hyperspectral imagery and airborne bathymetric lidar reveal that the presence of a strongly reflecting benthic layer under seagrass affects the elevation estimates towards the bottom depth instead of the top of seagrass canopy. Full waveform lidar was also investigated for bathymetry and similar performance to discrete lidar was observed. A provisional classification was performed with limited ground reference samples and four supervised classifiers were applied in the study to investigate the capability of airborne bathymetric lidar and hyperspectral imagery to identify seagrass genera. The overall classification accuracy is highly variable and strongly dependent on the classification strategy used. Features from bathymetric lidar alone are not sufficient for substrate classification, while hyperspectral imagery alone showed significant capability for substrate classification with over 95% overall accuracy. The fusion of hyperspectral imagery and bathymetric lidar only marginally improved the overall accuracy of seagrass classification.     

Feasibility of estimating leaf water content using spectral indices from WorldView-3’s near-infrared and shortwave infrared bands

A recently-launched high-resolution commercial satellite, DigitalGlobe’s WorldView-3, has 8 bands in the shortwave infrared (SWIR) wavelength region, which may be capable of estimating canopy water content at 3.7-m spatial resolution. WorldView-3 also has 8 multispectral bands at 1.24-m resolution with two bands in the near-infrared (NIR). The relative spectral response functions for WorldView-3 were provided by DigitalGlobe, Inc., and band reflectances were determined for reflectance spectra of PROSPECT model simulations and leaf data from maize, trees, grasses, and broadleaf herbaceous eudicots. For laboratory measurements, the range of leaf water contents was extended by including drying leaves and leaf stacks of corn, soybean, oaks, and maples. Correlations between leaf water content and spectral indices from model simulations suggested that indices using SWIR band 1 (center wavelength 1210 nm) had low variability with respect to leaf water content, but also low sensitivity. Other indices using SWIR band 5 (2165 nm) had the highest sensitivity, but also had high variability caused by different values of the leaf structure parameter in PROSPECT. Indices using SWIR bands 2, 3 and 4 (1570, 1660, and 1730 nm, respectively) had high correlations and intermediate variability from the leaf structure parameter. Spectral indices calculated from the leaf data had the same overall patterns as the simulations for variation and sensitivity; however, indices using SWIR band 1 had low correlations, and the best correlations were from indices that used SWIR bands 2, 3 and 4. Spectral indices for maize, grasses, and herbaceous crops and weeds had similar responses to leaf water content; tree leaves had higher index values and saturated at lower leaf water contents. The specified width of NIR band 2 (860–1040 nm) overlaps the water absorption feature at 970 nm wavelength; however, the normalized difference of NIR band 1 and 2 was insensitive to water content because NIR band 2’s spectral response was most heavily weighted to wavelengths less than 930 nm. The high spatial resolution of the WorldView-3 SWIR data will help analyze how variation among plant species and functional groups affects spectral responses to differences in canopy water content.     

Visual tracking for the recovery of multiple interacting plant root systems from X-ray $$\upmu $$CT images

We propose a visual object tracking framework for the extraction of multiple interacting plant root systems from three-dimensional X-ray micro computed tomography images of plants grown in soil. Our method is based on a level set framework guided by a greyscale intensity distribution model to identify object boundaries in image cross-sections. Root objects are followed through the data volume, while updating the tracker’s appearance models to adapt to changing intensity values. In the presence of multiple root systems, multiple trackers can be used, but need to distinguish target objects from one another in order to correctly associate roots with their originating plants. Since root objects are expected to exhibit similar greyscale intensity distributions, shape information is used to constrain the evolving level set interfaces in order to lock trackers to their correct targets. The proposed method is tested on root systems of wheat plants grown in soil.     

Pop Up Play: a digital creative play space

This article discusses the research findings from a year-long investigation funded by a Digital R&D for the Arts grant. The overarching aims of this research project were to understand how arts and cultural organisations can access mixed-reality environments and digital technology for creative play and learning, and how they can enable children and young people to access meaningful digital realm engagement. The article starts by introducing the underlying philosophical and cognitive framework built from embodiment philosophy, gaming theory and digital pedagogy that helped the research team determine what was meant by meaningful engagement in mixed reality. This is woven into an analysis of the four action-research case studies, followed by a discussion on the potential future areas for investigation. The conclusion evaluates how the resultant Pop Up Play product (free software download, supporting materials and bespoke digital creative play framework http://thesparkarts.co.uk/popupplay/) can be considered an environment for communications skill development, innovative thinking and immersive exploration through experiential play.     

Using knowledge structures to redesign an instructor-operator station

Frequently, user interface (UI) designers must choose between modifying an established, but suboptimal and familiar, UI or to avoid such changes. Changing the UI’s, organization may frustrate users who have become familiar with the original design, whereas failing to make changes may force users to perform at an unsatisfactory level. This paper presents two studies that investigate whether users familiar with a poorly designed UI would find items faster, and prefer a reorganized UI that conformed to domain expert knowledge, or would their familiarity with the original UI yield faster performance and higher satisfaction.This paper describes activities to redesign a menu structure in a simulator instructor–operator station (IOS) using hierarchical card sorting and cluster analysis (Romesburg, 2004). This analysis was used to reorganize the menu structure to reflect the knowledge representations of domain experts in accordance with the principle of proximity compatibility (Wickens and Carswell, 1995, Rothrock et al., 2006). The new design was validated with a separate set of users by a reaction time experiment and preference selection.     

AutoTutor: Incorporating Back-Channel Feedback and Other Human-Like Conversational Behaviors into an Intelligent Tutoring System

This paper describes our recent attempts to incorporate human-like conversational behaviors into the dialog moves delivered by an animated pedagogical agent that simulates human tutors. We first present a brief overview of the modules comprising AutoTutor, an intelligent tutoring system. The second section describes a set of conversational behaviors that are being incorporated into AutoTutor. The behaviors of interest involve variations in intonation, head movements, arm and hand movements, facial expressions, eye blinking, gaze direction, and back-channel feedback. The final section presents a recent empirical study concerned with back-channel feedback events during human-to-human tutoring sessions. The back-channel feedback events emitted by tutors are mostly positive (63%), mostly verbal (77%), and immediately follow speech-act boundaries or noun-phrase boundaries (83%). Tutors also deliver back-channelevents at a very high rate when students are emitting dialog, about 13 events per minute. Conversely, 88% of students' back-channel feedback events are head nods, and they occur at unbounded locations (63%).