Linearity of the Faraday-rotation-type ac magnetic-field sensor with a ferrimagnetic or ferromagnetic rotator film

We analyze the linearity and modulation depth of ac magnetic-field sensors or current sensors, using a ferrimagnetic or ferromagnetic film as the Faraday rotator and employing the detection of only the zeroth-order optical diffraction component from the rotator. It is theoretically shown that for this class of sensor the condition of a constant modulation depth and that of a constant ratio error give an identical series of curves for the relationship between Faraday rotation angle Θ and polarizer/analyzer relative angle Φ. We give some numerical examples to demonstrate the usefulness of the result with reference to a rare-earth iron garnet film as the rotator.     

Randomly accessible, multilayered optical memory with a Bi(12)SiO(20) crystal

A read-and-write, randomly accessible, multilayered optical memory with a Bi(12) SiO(20) crystal as the medium is demonstrated. Data are recorded in the crystal as an absorption change that is due to the photochromic effect. These data are successfully recorded, read, and selectively erased in five layers in the crystal. The axial-separation distance between neighboring layers is 30 μm, and the lateral distance between bits is 5 μm. Selective bit erasure of the data is accomplished by illumination of the recorded bit datum with He-Ne laser light. To our knowledge, this is the first successful demonstration of the selective optical erasure of the photochromic effect in a BSO crystal.     

Three-dimensional optical bit-memory recording and reading with a photorefractive crystal: analysis and experiment

We analyze the three-dimensional refractive-index distribution that is induced locally when a laser beam is focused onto a very small region in a photorefractive crystal. The formation of the index distribution is deduced from the temporal behavior of the electron density distribution in the crystal under non-steady-state conditions. The density distribution is computed by the use of a set of the recurrence relations that was derived from Kukhtarev's equations, which describe the transport of electrons in time. In particular, we calculated the index distribution formed in Fe-doped LiNbO(3) crystals. To verify the validity of our analysis, we read, by using a phase-contrast microscope, refractive-index dots that were recorded in Fe-doped LiNbO(3) crystals. A good agreement was obtained between experimental results and the calculated phase-contrast images when the characteristics of the imaging system are taken into account. We also found that the induced index change is largest when the c axis of the LiNbO(3) crystal is oriented parallel to the polarization direction of the reading beam. Under this optimal condition, we succeeded in recording up to 10 layers of readable data in a LiNbO(3) crystal.     

Influence of Matrices on Oxygen Sensing of Three Sensing Films with Chemically Conjugated Platinum Porphyrin Probes and Preliminary Application for Monitoring of Oxygen Consumption of Escherichia coli (E. coli)

Oxygen sensing films were synthesized by a chemical conjugation of functional platinum porphyrin probes in silica gel, polystyrene (PS), and poly(2-hydroxyethyl methacrylate) (PHEMA) matrices. Responses of the sensing films to gaseous oxygen and dissolved oxygen were studied and the influence of the matrices on the sensing behaviors was investigated. Silica gel films had the highest fluorescence intensity ratio from deoxygenated to oxygenated environments and the fastest response time to oxygen. PHEMA films had no response to gaseous oxygen, but had greater sensitivity and a faster response time for dissolved oxygen than those of PS films. The influence of matrices on oxygen response, sensitivity and response time was discussed. The influence is most likely attributed to the oxygen diffusion abilities of the matrices. Since the probes were chemically immobilized in the matrices, no leaching of the probes was observed from the sensing films when applied in aqueous environment. One sensing film made from the PHEMA matrix was used to preliminarily monitor the oxygen consumption of Escherichia coli (E. coli) bacteria. E. coli cell density and antibiotics ampicillin concentration dependent oxygen consumption was observed, indicating the potential application of the oxygen sensing film for biological application.     

Scalable multi-variate analytics of seismic and satellite-based observational data

Over the past few years, large human populations around the world have been affected by an increase in significant seismic activities. For both conducting basic scientific research and for setting critical government policies, it is crucial to be able to explore and understand seismic and geographical information obtained through all scientific instruments. In this work, we present a visual analytics system that enables explorative visualization of seismic data together with satellite-based observational data, and introduce a suite of visual analytical tools. Seismic and satellite data are integrated temporally and spatially. Users can select temporal ;and spatial ranges to zoom in on specific seismic events, as well as to inspect changes both during and after the events. Tools for designing high dimensional transfer functions have been developed to enable efficient and intuitive comprehension of the multi-modal data. Spread-sheet style comparisons are used for data drill-down as well as presentation. Comparisons between distinct seismic events are also provided for characterizing event-wise differences. Our system has been designed for scalability in terms of data size, complexity (i.e. number of modalities), and varying form factors of display environments.     

Structures and spectroscopic properties of nonperipherally and peripherally substituted metal-free phthalocyanines: a substitution effect study based on density functional theory calculations

The molecular structures, molecular orbitals, atomic charges, electronic absorption spectra, and infrared (IR) and Raman spectra of a series of substituted metal-free phthalocyanine compounds with four (1, 3, 5, 7) or eight (2, 4, 6, 8) methoxyl (1, 2, 5, 6) or methylthio groups (3, 4, 7, 8) on the nonperipheral (1-4) or peripheral positions (5-8) of the phthalocyanine ring are studied by density functional theory (DFT) and time-dependent DFT (TD-DFT) calculations. The calculated structural parameters and simulated electronic absorption and IR spectra are compared with the X-ray crystallography structures and the experimentally observed electronic absorption and IR spectra of the similar molecules, and good agreement between the calculated and experimental results is found. The substitution of the methoxyl or methylthio groups at the nonperipheral positions of the phthalocyanine ring has obvious effects on the molecular structure and spectroscopic properties of the metal-free phthalocyanine. Nonperipheral substitution has a more significant influence than peripheral substitution. The substitution effect increases with an increase in the number of substituents. The methylthio group shows more significant influence than the methoxyl group, despite the stronger electron-donating property of the methoxyl group than the methylthio group. The octa-methylthio-substituted metal-free phthalocyanine compounds have nonplanar structures whose low-lying occupied molecular orbitals and electronic absorption spectra are significantly changed by the substituents. The present systematical study will be helpful for understanding the relationship between structures and properties in phthalocyanine compounds and designing phthalocyanines with typical properties.     

Real time 3D simulation for nose surgery and automatic individual prosthesis design

This paper presents an intuitive nose surgery planning and simulation system, using 3D laser scan image and lateral X-ray image, to provide high quality prediction of the postoperative appearance, and design the patient specific prosthesis model automatically. After initial registration, the internal surface of soft tissue at the nose region was generated by the statistical data for soft tissue thickness adapted by the individual thickness information from the X-ray image. Then, the sketch contour of the 3D scan data on the lateral X-ray image was modified manually or adjusted automatically according to some aesthetic statistical data, to drive the simulation in real time by the state-of-the-art Laplacian surface deformation method. When satisfied with the 3D postoperative appearance, the deformation was mapped to the internal surface of soft tissue, and the change before and after simulation was utilized to generate the patient specific prosthesis model automatically. The surgeons who used the system confirmed that this planning system is attractive and has potential for daily clinical practice.     

Structural-symmetry-related sequence patterns of the proteins of beta-propeller family

It is still not very clear to what extent and how does the amino acid sequences of proteins determine their tertiary structures. In this paper, we report our investigations of the sequence-structure relations of the proteins in the beta-propeller fold family, which adopt highly symmetrical tertiary structures while their sequences appear "random". We analyzed the amino acid sequences by using a similarity matrix plus Pearson correlation method and found that the sequences can show the same symmetries as their tertiary structures only if we deduce the conditions of sequence similarity. This suggests that some key residues may play an important role in the formation of the tertiary structures of these proteins.     

A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue

Proteomic analysis of formalin-fixed paraffin-embedded (FFPE) tissue offers significant diagnostic utility but is complicated due to the high level of covalently crosslinked proteins arising from formalin fixation. To address these challenges, we developed a reliable protein extraction method for FFPE tissue, based on heat-induced antigen retrieval within a pressure cooker. The protein extraction yield from archival FFPE tissue section is approximately 90% of that recovered from frozen tissue. This method demonstrates preservation of immunoreactivity and recovery of full-length proteins by Western blotting. Additionally, we developed a well-based RP protein array platform utilizing an electrochemiluminescence detection system. Protein samples derived from FFPE tissue by means of laser capture dissection, with as few as 500 shots demonstrate measurable signal differences for different proteins. The lysates coated to the array plate, remain stable over 1?month at room temperature. Theses data suggest that this new protein-profiling platform coupled with the protein extraction method can be used for molecular profiling analysis in FFPE tissue, and contribute to the validation and development of biomarkers in clinical studies.