The influence of dietary inulin and oligofructose on the cell-mediated and humoral immunity in rats

This paper reviews evidence for the immune-enhancing effects of prebiotics. The influence of inulin and oligofructose on the immune functions and the structure of immune peripheral organs in male Wistar rats was investigated after 4 months feeding. Rats fed isocaloric purified diets contained 10% inulin or oligofructose. The rats of control group had no feeding any prebiotics. The enlargement of a number of T-cells and increasing of major histocompatibility complex (MHC-II) molecule on the surface of an antigen-presenting cells of spleen, mesenteric lymph nodes, thymus was noted. The increasing of content interleukin-2 and interleukin-4 in blood was noted in rats fed inulin and oligofructose. The increased activity of peritoneal macrophages was confirmed by enhance superoxid anion production and phagocytosis. The dietary prebiotics do not influence on the apoptosis of immunocytes. The immune-enhancing effects of prebiotics was confirmed by morphological investigation of peripheral lymphoid organs.     

Relationships of slice shear force and Warner-Bratzler shear force of beef strip loin steaks as related to the tenderness gradient of the strip loin

This study was conducted to investigate the effects of steak location within a strip loin and USDA quality grade on muscle fiber angle, slice shear force (SSF), and Warner-Bratzler shear force (WBSF) and to determine the relationship between SSF and WBSF. Steak location influenced both SSF and WBSF values, as steaks from the anterior portion were typically tenderer than steaks from the posterior end. Although there is some discrepancy between the two shear force methods, both agree that at least the first 5 anterior-most steaks are comparable. Muscle fiber angle was affected by steak position within the strip loin, as the fiber angle shifted between steaks 7 and 8. Quality grade had a significant effect on beef tenderness for both SSF and WBSF. Finally, there was a strong relationship between lateral SSF and average WBSF (r = 0.64), which are currently the most commonly used measurements for instrumental tenderness.     

Comparison of Mycobacterium tuberculosis genomes reveals frequent deletions in a 20 kb variable region in clinical isolates

The Mycobacterium tuberculosis complex is associated with a remarkably low level of structural gene polymorphism. As part of a search for alternative forms of genetic variation that may act as a source of biological diversity in M. tuberculosis, we have identified a region of the genome that is highly variable amongst a panel of unrelated clinical isolates. Fifteen of 24 isolates examined contained one or more copies of the M. tuberculosis-specific IS6110 insertion element within this 20 kb variable region. In nine of the isolates, including the laboratory-passaged strain H37Rv, genomic deletions were identified, resulting in loss of between two and 13 genes. In each case, deletions were associated with the presence of a copy of the IS6110 element. Absence of flanking tri- or tetra-nucleotide repeats identified homologous recombination between adjacent IS6110 elements as the most likely mechanism of the deletion events. IS6110 insertion into hot-spots within the genome of M. tuberculosis provides a mechanism for generation of genetic diversity involving a high frequency of insertions and deletions.     

Bench- and field-scale evaluation of chromium and cadmium extraction by electrokinetics

The results of bench-scale laboratory tests and in situ, pilot-scale demonstration of electrokinetic extraction of chromium and cadmium from contaminated soil are presented. The laboratory tests were conducted using 10 cm long samples under current density of 5 A/m² for 1200 h. Tests were conducted with and without citric acid amendment at the cathode. The results showed that citric acid improved extraction, especially in the sections near the cathode. However, processing was not enough to result in complete cleanup. The field demo was conducted at the Naval Air Weapon Station (NAWS), Point Mugu, California. Three cathodes were centered between six anodes. The anode–cathode spacing was 4.45 m (15 ft). Constant voltage of 60 V (13 V/m) was applied for 20 days and then was reduced to 45 V (10 V/m) for 6 months. Citric acid was used to maintain the cathode pH at 4. After 6 months of treatment, 78% of the soil volume has been cleared of chromium or treated to below natural background levels. The results also indicated that 70% of the soil between the electrodes had been cleared of cadmium contamination. A comparison between the bench-scale and field demo showed that the field process was more effective than the lab tests. This indicated that small sample size will induce a negative effect on the efficiency of the process due to an increased impact of the boundaries on the overall process.     

Quantification of the compositional information provided by immonium ions on a quadrupole-time-of-flight mass spectrometer

Immonium ions have been largely overlooked during the rapid expansion of mass spectrometry-based proteomics largely due to the dominance of ion trap instruments in the field. However, immonium ions are visible in hybrid quadrupole-time-of-flight (QTOF) mass spectrometers, which are now widely available. We have created the largest database to date of high-confidence sequence assignments to characterize the appearance of immonium ions in CID spectra using a QTOF instrument under "typical" operating conditions. With these data, we are able to demonstrate excellent correlation between immonium ion peak intensity and the likelihood of the appearance of the expected amino acid in the assigned sequence for phenylalanine, tyrosine, tryptophan, proline, histidine, valine, and the indistinguishable leucine and isoleucine residues. In addition, we have clearly demonstrated a positional effect whereby the proximity of the amino acid generating the immonium ion to the amino terminal of the peptide correlates with the strength of the immonium ion peak. This compositional information provided by the immonium ion peaks could substantially improve algorithms used for spectral assignment in mass spectrometry analysis using QTOF platforms.