A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR

Intrinsically disordered proteins (IDPs) that lack stable conformations and are highly flexible have attracted the attention of biologists. Therefore, the development of a systematic method to identify polypeptide regions that are unstructured in solution is important. We have designed an “indirect/reflected” detection system for evaluating the physicochemical properties of IDPs using nuclear magnetic resonance (NMR). This approach employs a “chimeric membrane protein”-based method using the thermostable membrane protein PH0471. This protein contains two domains, a transmembrane helical region and a C-terminal OB (oligonucleotide/oligosaccharide binding)-fold domain (named NfeDC domain), connected by a flexible linker. NMR signals of the OB-fold domain of detergent-solubilized PH0471 are observed because of the flexibility of the linker region. In this study, the linker region was substituted with target IDPs. Fifty-three candidates were selected using the prediction tool POODLE and 35 expression vectors were constructed. Subsequently, we obtained ¹⁵N-labeled chimeric PH0471 proteins with 25 IDPs as linkers. The NMR spectra allowed us to classify IDPs into three categories: flexible, moderately flexible, and inflexible. The inflexible IDPs contain membrane-associating or aggregation-prone sequences. This is the first attempt to use an indirect/reflected NMR method to evaluate IDPs and can verify the predictions derived from our computational tools.     

Reduction of ASR-expansion using powders ground from various sources of reactive aggregates

This study assesses the potential of ground reactive aggregates to reduce or suppress expansion associated with ASR. Particular attention is paid to fine admixtures (<80 μm) added to mortars, which contain the reactive aggregates from which the fines were ground. Many varieties of aggregate (quarried and natural, igneous, metamorphic and sedimentary rocks) from different geological settings were subjected to an autoclave test. The replacement of 10–20% of the sand by reactive aggregate powder (RAP) of different surface areas from 11 different reactive aggregates led to the reduction of ASR-expansion by up to 78% compared with control mortars. Increasing the amount of fines led to better performance. No clear relationship was observed between the reactivity degree of the aggregates and the efficiency of their ground powder to reduce expansion. A general trend was found regarding the fineness of ground aggregates: finer particles were more effective in reducing expansion. The reduction of the expansion due to RAP is discussed in terms of parameters affecting its efficiency and of the mechanisms responsible for the reduction.     

TEM,XPS and SIMS Analyzes on Grain Boundary of Lanthanum Chromites

The morphological characteristics, chromium valence state, and cation transport in the vicinity of grain boundary in La_1-xCa_xCrO₃ were investigated by using TEM/EDS, XPS and SIMS techniques. The width of grain boundary was around 1 nm where anomalous enrichment of calcium was observed. Higher valence state of chromium such as Cr⁶⁺(d⁰) was detected in the grain boundaries whereas Cr³⁺(d³) and Cr⁴⁺(d²) were dominant in the bulk. Very fast interdiffusion of alkaline earths was observed in the Sr²⁺-La_0.75Ca_0.25CrO₃ system. All observed phenomena were correlated by assuming the A-site vacancy which may be induced by the formation of Cr⁶⁺ at grain boundaries.     

Validation of Methods for the Assay of Flurbiprofen and Flurbiprofen Sodium, Related Compounds and Volatile Impurities in Raw Materials and Tablets

A high performance liquid chromatographic method has been developed for the assay of flurbiprofen, or flurbiprofen sodium and related compounds in drug raw materials and tablets. A phenyl column with a mobile phase of acetonitrile: 1.0% acetic acid (60:40) provide for the resolution of twenty-one related compounds from the drug. Minimum detectable levels of the related compounds are 0.01% and minimum quantifiable levels are 0.1% or less. Total impurity levels in seven raw materials ranged from 0.0 to 0.6%. One impurity, 2-(4-biphenylyl) propionic acid, is present in most samples at about 0.3%. A gas chromatographic method was developed for organic volatile impurities     

Chemical Potential Diagrams for Rare Earth-Transition Metal-Oxygen Systems: I, Ln-V-O and Ln-Mn-O System

The thermodynamic properties of double oxides in rare earth-transition metal (V and Mn)-oxygen ternary systems have been collected and evaluated to examine their stability using chemical potential diagrams plotted as log (α_A/α_B) vs log ( P (O₂)). The thermodynamic regularities of perovskites, pyrochlores, and other compounds have been discussed in terms of the effective ionic radii across a series of rare earths. The obtained regularities have been used to estimate tentatively the thermodynamic properties of some rare-earth vanadium and manganese oxides.     

Test item bias in the WISC--R.

Notes that test-item bias in the Wechsler Intelligence Scale for Children (WISC) and WISC—Revised (WISC—R) Information subtest has concerned Canadian psychologists for over 3 decades. Several investigators have attempted to identify and evaluate the source of this bias. The method of choice in these studies has been rank-order comparisons of pass-rates between the standardized and modified items. It is argued that this methodology is incomplete to establish the presence or absence of item bias. In addition to observing the rank order of pass rates, it is recommended that a chi-square approach be used based on the proportion of responses within ability levels to evaluate test item bias. The advantages of this strategy are demonstrated with WISC—R data from 342 12–16 yr old psychiatric inpatients and outpatients. Results demonstrate the power of this methodology over simple rank-order comparisons. (French abstract) (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Development of an in-air RBS technique using a metal capillary

We have developed a simple Rutherford backscattering spectroscopic (RBS) method to analyze sample depth profiles in air. To avoid excessive energy loss of projectile ions in air, we have used a 3 MeV proton beam extracted into air with a metal capillary. Using this capillary, we were able to extract a sufficiently large proton beam current to perform in-air RBS and in-air PIXE without requiring any window, such as a thin film, between a vacuum chamber and air. We have validated our technique by analyzing the depth profiles for Au foils of various thicknesses, 0.25, 0.75, and 2.5 μm. A comparison of the experimental results with a simple theoretical calculation indicates that this technique is useful for analyzing the depth profile of any specimen in air.     

Phase diagram calculations of ZrO2-based ceramics with an emphasis on the reduction/oxidation equilibria of cerium ions in the ZrO2-YO1.5-CeO2-CeO1.5 system

Phase diagram calculations that were made previously for the ZrO₂-MO _m/2 (m = 2, 3, 4) systems and for the ZrO₂-YO_1.5-MO _m/2 (M = transition metals) systems have been extended to the ZrO₂-YO_1.5-CeO₂(-CeO_1.5) system to make an attempt to explain (1) thermogravimetric (TG) results as a function of oxygen potential, (2) electronic conductivity as a function of oxygen potential, and (3) a miscibility gap observed in air. The interaction parameters for the CeO₂-CeO_1.5-YO_1.5 system were obtained from the reported oxygen nonstoichiometry in CeO_2−x and rate earth doped ceria, (Ce,RE)O_2−δ . The interaction parameters for the ZrO₂-CeO₂ subsystem were obtained so as to reproduce the observed miscibility gap at 1273 K. Those thermodynamic properties can reproduce consistently the experimental behaviors of the electronic conductivity and the TG results in the (Zr_1−x Ce _x )_0.8Y_0.2O_1.9 solid solutions; these indicate the enhancement of reduction of CeO₂.     

Brominated and organophosphate flame retardants in selected consumer products on the Japanese market in 2008

The concentrations of traditional brominated flame retardants (BFRs) and organophosphate flame retardants (OPFRs) in new consumer products, including electronic equipment, curtains, wallpaper, and building materials, on the Japanese market in 2008 were investigated. Although some components of the electronic equipment contained bromine at concentrations on the order of percent by weight, as indicated by X-ray fluorescence analysis, the bromine content could not be fully accounted for by the BFRs analyzed in this study, which included polybrominated diphenylethers, decabromodiphenyl ethane, tetrabromobisphenol A, polybromophenols, and hexabromocyclododecanes. These results suggest the use of alternative BFRs such as newly developed formulations derived from tribromophenol, tetrabromobisphenol A, or both. Among the 11 OPFRs analyzed, triphenylphosphate was present at the highest concentrations in all the products investigated, which suggests the use of condensed-type OPFRs as alternative flame retardants, because they contain triphenylphosphate as an impurity. Tripropylphosphate was not detected in any samples; and trimethylphosphate, tributyl tris(2-butoxyethyl)phosphate, and tris(1,3-dichloro-2-propyl)phosphate were detected in only some components and at low concentrations. Note that all the consumer products evaluated in this study also contained traditional BFRs in amounts that were inadequate to impart flame retardancy, which implies the incorporation of recycled plastic materials containing BFRs that are of global concern.