Surface structural sensitivity of convergent-beam RHEED: Si (0 0 1) 2 x 1 models compared with dynamical simulations

The aim of this work is to evaluate the sensitivity of convergent-beam RHEED for the refinement of surface atomic structure. We have compared experimental and theoretical convergent-beam RHEED patterns from the silicon (0 0 1) reconstructed surface. The experiment was carried out in a custom designed UHV diffraction camera,using a micron sized probe. Both experimental and theoretical CB-RHEED patterns show complex details, highly sensitive to the surface structure. The multiple scattering simulations were based on two experimental structural models which make different assumptions for dimer tilt, one derived from X-ray diffraction results, and another from LEED data. The simulated CB-RHEED patterns using the X-ray model were found to be in closer agreement with our experiment than the LEED model. However, the agreement is not entirely satisfactory, suggesting that further improvement on this model is necessary.     

A model describing the effect of temperature history on lag time for Listeria monocytogenes

A model was built to describe the influence of the temperature and the duration of pre-incubation on the lag time for regrowth of Listeria monocytogenes at low temperature. This model is consistent with the usual procedure used to calculate lag times of cultures growing under fluctuating temperatures. It also describes the effect of prolonged starvation conditions on the regrowth lag time and takes into account the influence of the physiological state of inocula in predictive models.     

Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins

A set of seven structurally related Sm proteins forms the core of the snRNP particles containing the spliceosomal U1, U2, U4 and U5 snRNAs. A search of the genomic sequence of Saccharomyces cerevisiae has identified a number of open reading frames that potentially encode structurally similar proteins termed Lsm (Like Sm) proteins. With the aim of analysing all possible interactions between the Lsm proteins and any protein encoded in the yeast genome, we performed exhaustive and iterative genomic two-hybrid screens, starting with the Lsm proteins as baits. Indeed, extensive interactions amongst eight Lsm proteins were found that suggest the existence of a Lsm complex or complexes. These Lsm interactions apparently involve the conserved Sm domain that also mediates interactions between the Sm proteins. The screens also reveal functionally significant interactions with splicing factors, in particular with Prp4 and Prp24, compatible with genetic studies and with the reported association of Lsm proteins with spliceosomal U6 and U4/U6 particles. In addition, interactions with proteins involved in mRNA turnover, such as Mrt1, Dcp1, Dcp2 and Xrn1, point to roles for Lsm complexes in distinct RNA metabolic processes, that are confirmed in independent functional studies. These results provide compelling evidence that two-hybrid screens yield functionally meaningful information about protein-protein interactions and can suggest functions for uncharacterized proteins, especially when they are performed on a genome-wide scale.     

A simulation study evaluating the performance of high-density electrode arrays on myocardial tissue

Multielectrode arrays used to detect cellular activation have become so dense (electrodes per square millimeter) as to jeopardize the basic assumptions of activation mapping; namely, that electrodes are points adequately separated as to not interfere with the tissue or each other. This paper directly tests these assumptions for high-density electrode arrays. Using a finite element model with modified Fitzhugh-Nagumo kinetics, we represent electrodes as isopotential surfaces of varying widths and spacing ratio (SR) (center-to-center spacing divided by electrode width). We examine the signal strength and ability of a single electrode to detect activation due to a passing wavefront. We find that high-density arrays do not cause significant wavefront curvature or alter activation timing in the underlying tissue. Relationships between signal strength, cross talk, and array design are explained by the interaction of the propagating wavefront and induced sources on the isopotential electrodes. Sensitivity analysis shows that these results may be generalized to a wide range of physiologically relevant designs and applications. We conclude that electrode array designs in which electrode spacing greatly exceeds electrode diameter are overly conservative and that arrays with a SR of less than 2.0 may perform successfully in electrophysiological studies.     

Femoral surface strain in intact composite femurs: a custom computer analysis of the photoelastic coating technique

Understanding how forces are distributed through the proximal femur has many clinical applications for surgeons, researchers, and prosthetic designers. A new system for two-dimensional analysis of femoral surface strain was developed and applied to intact composite femurs. The photoelastic coating method was used to resolve the surface strain under axial loading, and strain analysis was performed using digital imaging of the strain patterns and original computer programs. The technique provides qualitative and quantitative data that describes overall femoral surface strains more completely than previous point analysis and strain gauge techniques. Results from repeated testing found the photoelastic process, computer imaging and computer analysis of strain areas to be statistically repeatable.     

Probing the limits: ultraslow diffusion and heterogeneous electron transfers in redox polyether hybrid cobalt bipyridine molten salts

This paper describes microelectrode voltammetry measurements of self-diffusion coefficients and of heterogeneous Co(II/III) electron-transfer rate constants (ko) in undiluted molten salts of three cobalt tris(bipyridine) perchlorate complexes in which the bipyridine ligands are "tailed" with poly(propylene oxide) and poly(ethylene oxide) oligomers. The self-diffusion coefficients are measured with potential step chronoamperometry and range from 10(-12) to 10(-17) cm2/s, while the quasi-reversible reaction rate constants are measured using cyclic voltammetry and small potential steps and range from 10(-7) to 10(-12) cm/s. The ko measurements are unusual in that when rate constants become smaller, the reaction remains quasi-reversible, because of concurrently decreasing self-diffusion rates. The measurements are, furthermore, accomplished in the face of uncompensated resistances that range from mega- to gigaohms, which is made possible by the combination of microelectrode properties and small diffusivities. The melt in which self-diffusion and ko values are smallest is at a temperature below its nominal glassing transition and in the regime of molecule-scale diffusion profiles.     

Development of soluble glasses for biomedical use Part II: The biological response of human osteoblast cell lines to phosphate-based soluble glasses

Soluble glasses are considered to be of potential clinical value in orthopaedic and dental surgery. However, the biological response to these materials is not well understood. To determine the effects of these glasses, two human osteoblast cell lines, MG63 and HOS (TE85), were incubated in vitro in the presence of increasing concentrations of extracts of the glasses. The effects of the extracts on cell growth was measured using the MTT assay and an ELISA assay was used to measure the expression of bone sialoprotein (BSP), osteonectin (ON) and fibronectin (FN), antigens which play a fundamental part in the integrity and function of hard connective tissue. The results showed that the proliferation of the cells was adversely affected only by the more soluble glasses, which also down-regulated the expression of the bone-associated proteins. In contrast, the extract of the glass with the lowest dissolution rate, which contains relatively elevated levels of Ca²⁺, was found to enhance bone cell growth and antigen expression. These findings suggest that the compositions of these glasses at least partly determine the response of cells and thus, that the glasses could be modified to elicit a more optimal biological response and clinical efficacy.     

Optical configuration and color-representation range of a variable-pitch dot matrix holographic printer

The optical system configuration and design of a dot matrix holographic printer that can create image grating pixels of variable size, arbitrary pitch, and discretionary angle on a photoresist plate are presented. With the capability to vary spot size, grating orientation, and grating pitch on the fly, this newly developed holographic printer can apply a prespecified color at each specific viewing angle. Diffractive images with various visual effects and the wide color range that are possible by use of this system are examined in detail.     

Electrochemical pretreatment of polycrystalline gold electrodes to produce a reproducible surface roughness for self-assembly: a study in phosphate buffer pH 7.4

It has been emphasized in several studies that the state of the surface, including the surface roughness, is very important for the reproducible formation of high-quality self-assembled monolayers on gold. The pulsed-potential pretreatment procedure described in this paper can, in a reproducible way, reduce the surface roughness of mechanically polished polycrystalline gold electrodes by a factor 2. The developed procedure, in which the gold is alternately oxidized and reduced, has been optimized for use in a flow system (100 mM phosphate buffer pH 7.4). The influence of the pretreatment procedure on the surface roughness of the electrodes has been studied by in-situ oxygen adsorption measurements using cyclic voltammetry. The most effective pulse regime in producing a gold surface with a reproducible and relatively low surface roughness is a triple-potential pulse waveform, with potentials of +1.6, 0.0, and -0.8 Vvs SCE and pulse widths of 100 ms for each potential. Prolonged pulsing for 2000-5000 s with the gold working electrode in a flow-through cell showed an electropolishing effect, i.e., a decrease of the roughness in time. Flow conditions are very important: the roughness decreased faster at higher flow rates, while an increase was observed without flow. A process of reconstruction and dissolution of gold during application of the potential pulses under flow conditions is assumed to account for the observed phenomena. A self-assembled monolayer of thioctic acid with reproducible characteristics, determined with impedance measurements, could be formed on a pretreated gold surface.     

Observations and calculations of light scattering from clusters of spheres

Two-dimensional angular optical scattering (TAOS) patterns from clusters of polystyrene latex spheres are measured in the near-forward and near-backward directions. In both cases, the scattering pattern contains a rich and complicated structure that is the result of the interaction and interference of light among the primary particles. Calculations are made for aggregates that are similar to those generated experimentally and also demonstrate the rich structure in the scattering pattern. A comparison of the experimental and theoretical TAOS patterns gives good qualitative agreement.