Influence of grain boundary weak links on the nonequilibrium response of YBaCuO thin films to short laser pulses

The transient voltage response in both epitaxial and granular YBaCuO thin films to 80 ps pulses of YAGNd laser radiation of wavelength 0.63 and 1.54 m was studied. In the normal and resistive states both types of films demonstrate two components: a nonequilibrium picosecond component and a bolometric nanosecond one. The normalized amplitudes are almost the same for all films. In the superconducting state we observed a kinetic inductive response and two-component shape after integration. The normalized amplitude of the response in granular films is up to five orders of magnitude larger than in epitaxial films. We interpret the nonequilibrium response in terms of a suppression of the order parameter by the excess of quasiparticles followed by the change of resistance in the normal and resistive states or kinetic inductance in the superconducting state. The sharp rise of inductive response in granular films is explained both by a diminishing of the cross section for current percolation through the disordered network of Josephson weak links and by a decrease of condensate density in neighboring regions.     

A PDE method for patchwise approximation of large polygon meshes

Three-dimensional (3D) representations of complex geometric shapes, especially when they are reconstructed from magnetic resonance imaging (MRI) and computed tomography (CT) data, often result in large polygon meshes which require substantial storage for their handling, and normally have only one fixed level of detail (LOD). This can often be an obstacle for efficient data exchange and interactive work with such objects. We propose to replace such large polygon meshes with a relatively small set of coefficients of the patchwise partial differential equation (PDE) function representation. With this model, the approximations of the original shapes can be rendered with any desired resolution at interactive rates. Our approach can directly work with any common 3D reconstruction pipeline, which we demonstrate by applying it to a large reconstructed medical data set with irregular geometry.     

Modeling organizational performance indicators

Performance measurement and analysis is crucial for steering the organization to realize its strategic and operational goals. Relevant performance indicators and their relationships to goals and activities need to be determined and analyzed. Current organization modeling approaches do not reflect this in an adequate way. This paper attempts to fill the gap by presenting a framework for modeling performance indicators within a general organization modeling framework.     

An assessment of photosynthetic light use efficiency from space: Modeling the atmospheric and directional impacts on PRI reflectance

Estimation of photosynthetic light use efficiency (ε) from satellite observations is an important component of climate change research. The photochemical reflectance index, a narrow waveband index based on the reflectance at 531 and 570 nm, allows sampling of the photosynthetic activity of leaves; upscaling of these measurements to landscape and global scales, however, remains challenging. Only a few studies have used spaceborne observations of PRI so far, and research has largely focused on the MODIS sensor. Its daily global coverage and the capacity to detect a narrow reflectance band at 531 nm make it the best available choice for sensing ε from space. Previous results however, have identified a number of key issues with MODIS-based observations of PRI. First, the differences between the footprint of eddy covariance (EC) measurements and the MODIS footprint, which is determined by the sensor's observation geometry make a direct comparison between both data sources challenging and second, the PRI reflectance bands are affected by atmospheric scattering effects confounding the existing physiological signal. In this study we introduce a new approach for upscaling EC based ε measurements to MODIS. First, EC-measured ε values were “translated” into a tower-level optical PRI signal using AMSPEC, an automated multi-angular, tower-based spectroradiometer instrument. AMSPEC enabled us to adjust tower-measured PRI values to the individual viewing geometry of each MODIS overpass. Second, MODIS data were atmospherically corrected using a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which uses a time series approach and an image-based rather than pixel-based processing for simultaneous retrievals of atmospheric aerosol and surface bidirectional reflectance (BRDF). Using this approach, we found a strong relationship between tower-based and spaceborne reflectance measurements (r² = 0.74, p < 0.01) throughout the vegetation period of 2006. Swath (non-gridded) observations yielded stronger correlations than gridded data (r² = 0.58, p < 0.01) both of which included forward and backscatter observations. Spaceborne PRI values were strongly related to canopy shadow fractions and varied with different levels of ε. We conclude that MAIAC-corrected MODIS observations were able to track the site-level physiological changes from space throughout the observation period.     

Light scattering from anisotropic, randomly rough, perfectly conducting surfaces

An approach is introduced for performing rigorous numerical simulations of electromagnetic wave scattering from randomly rough, perfectly conducting surfaces. It is based on a surface integral technique, and consists of determining the unknown electric surface current densities from which the electromagnetic field everywhere can be determined. The method is used to study the scattering of a p-polarized beam from an anisotropic Gaussian, randomly rough, perfectly conducting surface. It is demonstrated that the surface anisotropy gives rise to interesting and pronounced signatures in the angular intensity distribution of the scattered light. The origins of these features are discussed.     

Estimating the Natural Illumination Conditions from a Single Outdoor Image

Given a single outdoor image, we present a method for estimating the likely illumination conditions of the scene. In particular, we compute the probability distribution over the sun position and visibility. The method relies on a combination of weak cues that can be extracted from different portions of the image: the sky, the vertical surfaces, the ground, and the convex objects in the image. While no single cue can reliably estimate illumination by itself, each one can reinforce the others to yield a more robust estimate. This is combined with a data-driven prior computed over a dataset of 6 million photos. We present quantitative results on a webcam dataset with annotated sun positions, as well as quantitative and qualitative results on consumer-grade photographs downloaded from Internet. Based on the estimated illumination, we show how to realistically insert synthetic 3-D objects into the scene, and how to transfer appearance across images while keeping the illumination consistent.     

An approach to protein homology modelling based on an ensemble of NMR structures: application to the Sox-5 HMG-box protein

A new approach has been developed to reduce multiple proteinstructures obtained from NMR structure analysis to a smallernumber of representative structures which still reflect thestructural diversity of the data sets. The method, based onthe clustering of similar structures, has been tested in thehomology model building of the structure of Sox-5, a sequence-specificDNA-binding protein belonging to the high mobility group (HMG)nuclear proteins family. Sox (SRY box) genes are the autosomalgenes related to the sex-determining SRY, Y chromosomal gene.The Sox-5 protein, encoded by one of the SRY-related genes,displays a 29% sequence identity with the HMG1 B-box domainwhose structure, determined previously by NMR, has been usedin our study to predict the structure of Sox-5. Two independentensembles of HMG1 structures, each represented by closely relatedcoordinate sets, were used. Nine representative structures forHMG1 were subsequently selected as starting points for the modellingof Sox-5. The model of the protein shows close similarity tothe HMG1 fold, with differences at the secondary structure levellocated mainly in a-helices 1 and 3. A left-handed, three residueper turn polyproline II helix, forming a conserved polyprolineII/-helix supersecondary motif, was identified in the N-terminalregion of Sox-5 and other HMG boxes.     

Exploring networks with traceroute-like probes: Theory and simulations

Mapping the Internet generally consists in sampling the network from a limited set of sources by using traceroute-like probes. This methodology, akin to the merging of different spanning trees to a set of destination, has been argued to introduce uncontrolled sampling biases that might produce statistical properties of the sampled graph which sharply differ from the original ones. In this paper, we explore these biases and provide a statistical analysis of their origin. We derive an analytical approximation for the probability of edge and vertex detection that exploits the role of the number of sources and targets and allows us to relate the global topological properties of the underlying network with the statistical accuracy of the sampled graph. In particular, we find that the edge and vertex detection probability depends on the betweenness centrality of each element. This allows us to show that shortest path routed sampling provides a better characterization of underlying graphs with broad distributions of connectivity. We complement the analytical discussion with a throughout numerical investigation of simulated mapping strategies in network models with different topologies. We show that sampled graphs provide a fair qualitative characterization of the statistical properties of the original networks in a fair range of different strategies and exploration parameters. Moreover, we characterize the level of redundancy and completeness of the exploration process as a function of the topological properties of the network. Finally, we study numerically how the fraction of vertices and edges discovered in the sampled graph depends on the particular deployements of probing sources. The results might hint the steps toward more efficient mapping strategies.     

Multi-angle remote sensing of forest light use efficiency by observing PRI variation with canopy shadow fraction

We show that observed co-variations at sub-hourly time scales between the photochemical reflectance index (PRI) and canopy light use efficiency (LUE) over a Douglas-fir forest result directly from sub-hourly leaf reflectance changes in a 531 nm spectral window roughly 50 nm wide. We conclude then, that over a forest stand we are observing the direct effects of photosynthetic down-regulation on leaf-level reflectance at 531 nm. Key to our conclusion is our ability to simultaneously measure the LUE and reflectance of the Douglas-fir stand as a function of shadow fraction from the “hot spot” to the "dark spot"dark spot” and a new finding herein, based on radiative transfer theory, that the magnitude of a normalized reflectance difference index (NDRI) such as PRI can vary with shadow fraction only in case the reflectance of the shaded and sunlit leaves differ in at least one of the NDRI bands.Our spectrometer measurements over a nearly 6 month period show that at a forest stand scale, only two NDRIs (both containing a band near 570 nm) vary with shadow fraction and are correlated with LUE; an NDRI with a band centered at 531 nm roughly 50 nm wide, and another near 705 nm. Therefore, we are able to conclude that only these two bands' reflectance differ between the sunlit and the shaded elements of the canopy. Their reflectance changes on time scales of a few minutes or less. Our observations also show that the reflectance changes at 531 nm are more highly correlated with variations in canopy light use efficiency when only sunlit canopy elements are viewed (the hot spot), than when only shaded elements (the dark spot) are viewed. Taken together then, these results demonstrate that the observed sub-hourly changes in foliage reflectance at 531 nm and 705 nm can only result from corresponding variations in photosynthetic rates.The importance of our results are as follows: (1) We show that variations in PRI with LUE are a direct result of rapid changes in foliage reflectance at 531 nm resulting from photosynthetic down-regulation, and can be observed at forest scales. (2) Our findings also suggest a new sensor and methodology for the direct retrieval from space of changes in forest LUE by measuring PRI as a function of shadow fraction using a multi-angle spectrometer simultaneously retrieving both shadow fraction and PRI.