VEDA: a web-based virtual environment for dynamic atomic force microscopy

We describe here the theory and applications of virtual environment dynamic atomic force microscopy (VEDA), a suite of state-of-the-art simulation tools deployed on nanoHUB (www.nanohub.org) for the accurate simulation of tip motion in dynamic atomic force microscopy (dAFM) over organic and inorganic samples. VEDA takes advantage of nanoHUB's cyberinfrastructure to run high-fidelity dAFM tip dynamics computations on local clusters and the teragrid. Consequently, these tools are freely accessible and the dAFM simulations are run using standard web-based browsers without requiring additional software. A wide range of issues in dAFM ranging from optimal probe choice, probe stability, and tip-sample interaction forces, power dissipation, to material property extraction and scanning dynamics over hetereogeneous samples can be addressed.     

Image segmentation for improved consistency in image-interpretation of opium poppy

The image-interpretation of opium poppy crops from very high resolution satellite imagery forms part of the annual Afghanistan opium surveys conducted by the United Nations Office on Drugs and Crime and the United States Government. We tested the effect of generalization of field delineations on the final estimates of poppy cultivation using survey data from Helmand province in 2009 and an area frame sampling approach. The sample data was reinterpreted from pan-sharpened IKONOS scenes using two increasing levels of generalization consistent with observed practice. Samples were also generated from manual labelling of image segmentation and from a digital object classification. Generalization was found to bias the cultivation estimate between 6.6% and 13.9%, which is greater than the sample error for the highest level. Object classification of image-segmented samples increased the cultivation estimate by 30.2% because of systematic labelling error. Manual labelling of image-segmented samples gave a similar estimate to the original interpretation. The research demonstrates that small changes in poppy interpretation can result in systematic differences in final estimates that are not included within confidence intervals. Segmented parcels were similar to manually digitized fields and could provide increased consistency in field delineation at a reduced cost. The results are significant for Afghanistan’s opium monitoring programmes and other surveys where sample data are collected by remote sensing.     

Approximating the Negative Binomial

This paper presents the results of a numerical investigation of six approximations to the cumulative negative binomial distribution. The approximations studied include two Poissons, Poisson Gram-Charlier, Normal, Normal Gram-Charlier and the Camp-Paulson. Two approximations were found to be extremely good: the Poisson Gram-Charlier when the probability p is large, and the Camp-Paulson almost everywhere.     

Modelling observed California Current mesoscale eddies and the ecosystem response

Satellite and in situ observations are used to test model dynamics for the California Current System (CCS). The model and data are combined to reconstruct the mesoscale ocean structure during a given three-week period. The resulting physical flow field is used to drive a 3D ecosystem model to interpret SeaWiFS and in situ chlorophyll-a (chl-a) variations. With this approach a more complete and consistent picture of the physical and ecosystem processes of the CCS is obtained, providing the basis for addressing fundamental questions about dynamics and predictability of the coastal ocean.