Theranostic Interpolation of Genomic Instability in Breast Cancer

Breast cancer is a diverse disease caused by mutations in multiple genes accompanying epigenetic aberrations of hazardous genes and protein pathways, which distress tumor-suppressor genes and the expression of oncogenes. Alteration in any of the several physiological mechanisms such as cell cycle checkpoints, DNA repair machinery, mitotic checkpoints, and telomere maintenance results in genomic instability. Theranostic has the potential to foretell and estimate therapy response, contributing a valuable opportunity to modify the ongoing treatments and has developed new treatment strategies in a personalized manner. “Omics” technologies play a key role while studying genomic instability in breast cancer, and broadly include various aspects of proteomics, genomics, metabolomics, and tumor grading. Certain computational techniques have been designed to facilitate the early diagnosis of cancer and predict disease-specific therapies, which can produce many effective results. Several diverse tools are used to investigate genomic instability and underlying mechanisms. The current review aimed to explore the genomic landscape, tumor heterogeneity, and possible mechanisms of genomic instability involved in initiating breast cancer. We also discuss the implications of computational biology regarding mutational and pathway analyses, identification of prognostic markers, and the development of strategies for precision medicine. We also review different technologies required for the investigation of genomic instability in breast cancer cells, including recent therapeutic and preventive advances in breast cancer.     

A Reliable Stochastic Numerical Analysis for Typhoid Fever Incorporating With Protection Against Infection

In this paper, a reliable stochastic numerical analysis for typhoid fever incorporating with protection against infection has been considered. We have compared the solutions of stochastic and deterministic typhoid fever model. It has been shown that the stochastic typhoid fever model is more realistic as compared to the deterministic typhoid fever model. The effect of threshold number T* hold in stochastic typhoid fever model. The proposed framework of the stochastic non-standard finite difference scheme (SNSFD) preserves all dynamical properties like positivity, bounded-ness and dynamical consistency defined by Mickens, R. E. The stochastic numerical simulation of the model showed that increase in protection leads to low disease prevalence in a population.     

Numerical simulation of the MHD equations by a kinetic-type method

We introduce a flux-splitting formula for the approximation of the ideal MHD equations in conservative form. The Faraday equation is considered as the average of an abstract kinetic equation, giving a flux-splitting formula. For the other part of the equations, we generalize formally the classical half-Maxwellian flux-splitting of the Euler equations. Numerical results on MHD shock tube problems are displayed.     

A branch-and-bound algorithm to minimize total weighted completion time on identical parallel machines with job release dates

In this paper, we consider an identical parallel machine scheduling problem with release dates. The objective is to minimize the total weighted completion time. This problem is known to be strongly NP-hard. We propose some dominance properties and two lower bounds. We also present an efficient heuristic. A branch-and-bound algorithm, in which the heuristic, the lower bounds and the dominance properties are incorporated, is proposed and tested on a large set of randomly generated instances.     

Abiotic stress of ZnO‐PEG,ZnO‐PVP,CuO‐PEG and CuO‐PVP nanoparticles enhance growth,sweetener compounds and antioxidant activities in shoots of Stevia rebaudiana Bertoni

Nanoparticles are known to play remarkable role as abiotic stress elicitors in plants. This study reports the comparative analysis of effects produced by capped [zinc oxide (ZnO)‐polyethylene glycol (PEG), ZnO‐polyvinyl pyrrolidone (PVP), copper oxide (CuO)‐PEG, CuO‐PVP] and uncapped (ZnO and CuO) nanoparticles on the medicinal plant, Stevia rebaudiana raised in vitro for the production of commercially important sweetener compounds. In context of shoot organogenesis, ZnO‐PEG, ZnO‐PVP, CuO‐PEG, CuO‐PVP were employed to the growth medium that resulted in increased growth parameters, and larger content of steviol glycosides as compared to the shoots raised in medium containing ZnO and CuO, revealed by high‐performance liquid chromatography. In the meanwhile, non‐enzymatic antioxidant activities including total phenolic content, total flavonoid content, total antioxidant capacity, total reducing power and 2,2‐diphenyl‐1‐picryl hydrazyl‐free radical scavenging activity were calculated and showed comparatively greater amounts in shoots grown in medium containing capped ZnO or CuO nanoparticles. Furthermore, the ZnO and its derivatives revealed to be more reactive at 1 mg/l of concentration. Whereas, the CuO and its derivatives produced greater response on Stevia at 10 mg/l concentration of nanoparticles. This study paves the way for more such studies encompassing capped and uncapped nanoparticles and their ultimate effect on in‐vitro grown plant tissues for the production of active metabolites on industrial scale.Inspec keywords: nanoparticles, chromatography, resins, polymers, zinc compounds, copper compounds, food technology, agricultureOther keywords: nanoparticles, sweetener compounds, antioxidant activities, Stevia rebaudiana Bertoni, abiotic stress elicitors, zinc oxide‐polyethylene glycol, zinc oxide‐polyvinyl pyrrolidone, copper oxide‐polyethylene glycol, medicinal plant, shoot organogenesis, steviol glycosides, high‐performance liquid chromatography, nonenzymatic antioxidant activities, total phenolic content, total flavonoid content, total antioxidant capacity, total reducing power, 2,2‐diphenyl‐1‐picryl hydrazylfree radical scavenging activity, derivatives, active metabolite production, copper oxide‐polyvinyl pyrrolidone     

A New Active Micro-Mixing Strategy

An active micro-mixing strategy through forcing the flow by synthetic wall jets is proposed. It is based on the interaction of induced streamwise vortices in a specific way. There is a spanwise shift between two quasi-streamwise vortices in such a way that one of them compresses the wall normal vorticity layer created by the other, leading to the generation of new wall normal vortical structures. The latter are subsequently tilted by the shear to give birth to new small-scale longitudinal active structures that are efficient in mixing. The feasibility of this strategy is shown through direct numerical simulations of high spatial and temporal resolution.     

Taxonomic investigation of selected rust fungi using scanning electron microscopy from Khyber Pakhtunkhwa,Pakistan

Rusts comprises the largest natural group of plant pathogens including approximately 8% of all described Fungi. Rust fungi are extremely plant pathogens responsible for great losses to agriculture productivity. Rust species belong to several genera among which more than half are Puccinia species. In Pakistan, rust causes severe damage to agriculture crops. Current study was carried out to identify and characterize different rust species common in the research area through microscopy and Scanning electron microscopy (SEM) in Khyber Pakhtunkhwa, Pakistan. Morpho-anatomical investigation of each collected rust species was carried out using different standard protocols. The dimensions of spores were measured and snapped under a stereomicroscope. SEM was used to examine the shape, size, and ornamentation of the spores of each rust fungus. Results revealed documentation of seven rust fungi, that is, Melampsora euphorbiae, Phragmidium barclayi, Puccinia nepalensis, P. exhausta, P. menthae, Uromyces capitatus, and Uromyces decorates belong to four different genera, were recorded. SEM revealed that spermogonia and Aecia were missing in most of the rust fungus studied. Uredinia was found in a scattered, irregular, lengthy, and epidermis-enclosed form. Urediniospores were found to be ovulating, elongated, echinulate, globose to sub-globose, ellipsoid to ovoid, and globose to sub-globose. Telia was found as sub-epidermal, amphigenous, dispersed, minute, and spherical cells. Teliospores ranged in form from cylindrical to oblong. The germ pores were detected in both apical (top cell) and basal (bottom cell) idiosyncratic and pedicel-attached cells. The techniques used in the current investigation will aid mycologists in rust identification and microscopic characterization.     

Machine learning for post-traumatic stress disorder identification utilizing resting-state functional magnetic resonance imaging

Early detection of post-traumatic stress disorder (PTSD) is essential for proper treatment of the patients to recover from this disorder. The aligned purpose of this study was to investigate the performance deviations in regions of interest (ROI) of PTSD than the healthy brain regions, to assess interregional functional connectivity and applications of machine learning techniques to identify PTSD and healthy control using resting-state functional magnetic resonance imaging (rs-fMRI). The rs-fMRI data of 10 ROI was extracted from 14 approved PTSD subjects and 14 healthy controls. The rs-fMRI data of the selected ROI were used in ANOVA to measure performance level and Pearson's correlation to investigate the interregional functional connectivity in PTSD brains. In machine learning approaches, the logistic regression, K-nearest neighbor (KNN), support vector machine (SVM) with linear, radial basis function, and polynomial kernels were used to classify the PTSD and control subjects. The performance level in brain regions of PTSD deviated as compared to the regions in the healthy brain. In addition, significant positive or negative functional connectivity was observed among ROI in PTSD brains. The rs-fMRI data have been distributed in training, validation, and testing group for maturity, implementation of machine learning techniques. The KNN and SVM with radial basis function kernel were outperformed for classification among other methods with high accuracies (96.6%, 94.8%, 98.5%) and (93.7%, 95.2%, 99.2%) to train, validate, and test datasets, respectively. The study's findings may provide a guideline to observe performance and functional connectivity of the brain regions in PTSD and to discriminate PTSD subject using only the suggested algorithms.