Synthesis and solution properties of comb polystyrenes

A new method for the synthesis of comb shaped polystyrenes of predetermined structure is described. Silicon-chlorine bonds are introduced into the backbone polystyrene by reaction of SiMe₂Cl₂ with hydrolysed styrene/vinyl acetate copolymers and coupled with polystyryl-lithium in benzene. From a common backbone polymer a series of comb polymers are prepared that have a constant number of branches but vary in branch length. The $\text{M}{}_{\mathrm{w}}\text{M}{}_{\mathrm{n}}$ of the whole comb polymers is about 1.3. The comb polymers with high branch density show θ (A₂) temperatures lower than that for linear polystyrene. The radius of gyration at θ (A₂) [〈S²〉_{θ (A2)}] is always larger than calculated from random flight statistics. For comb polymers with 20–30 branches increases with λ^?0.46 where λ is the fraction of polymer in the backbone. The intrinsic viscosities of the comb polystyrenes at θ (A₂) are equal to that of the parent backbone polymer when λ > 0.25 and increase only little when λ becomes equal to 0.1. Similar behaviour is found in toluene. Intrinsic viscosities in cyclohexane at 35°C show a complex pattern because of the θ-temperature variation.     

The carbamate kinase-like carbamoyl phosphate synthetase of the hyperthermophilic archaeon Pyrococcus furiosus, a missing link in the evolution of carbamoyl phosphate biosynthesis

Microbial carbamoyl phosphate synthetases (CPS) use glutamine as nitrogen donor and are composed of two subunits (or domains), one exhibiting glutaminase activity, the other able to synthesize carbamoyl phosphate (CP) from bicarbonate, ATP, and ammonia. The pseudodimeric organization of this synthetase suggested that it has evolved by duplication of a smaller kinase, possibly a carbamate kinase (CK). In contrast to other prokaryotes the hyperthermophilic archaeon Pyrococcus furiosus was found to synthesize CP by using ammonia and not glutamine. We have purified the cognate enzyme and found it to be a dimer of two identical subunits of Mr 32,000. Its thermostability is considerable, 50% activity being retained after 1 h at 100 degrees C or 3 h at 95 degrees C. The corresponding gene was cloned by PCR and found to present about 50% amino acid identity with known CKs. The stoichiometry of the reaction (two ATP consumed per CP synthesized) and the ability of the enzyme to catalyze at high rate a bicarbonate-dependent ATPase reaction however clearly distinguish P. furiosus CPS from ordinary CKs. Thus the CPS of P. furiosus could represent a primeval step in the evolution of CPS from CK. Our results suggest that the first event in this evolution was the emergence of a primeval synthetase composed of subunits able to synthesize both carboxyphosphate and CP; this step would have preceded the duplication assumed to have generated the two subdomains of modern CPSs. The gene coding for this CK-like CPS was called cpkA.     

Real-time quantitative PCR for the detection of minimal residual disease in acute lymphoblastic leukemia using junctional region specific TaqMan probes

Analysis of minimal residual disease (MRD) can predict outcome in acute lymphoblastic leukemia (ALL). A large prospective study in childhood ALL has shown that MRD analysis using immunoglobulin (Ig) and T cell receptor (TCR) gene rearrangements as PCR targets can identify good and poor prognosis groups of substantial size that might profit from treatment adaptation. This MRD-based risk group assignment was based on the kinetics of tumor reduction. Consequently, the level of MRD has to be defined precisely in follow-up samples. However, current PCR methods do not allow easy and accurate quantification. We have tested 'real-time' quantitative PCR (RQ-PCR) using the TaqMan technology and compared its sensitivity with two conventional MRD-PCR methods, ie dot-blot and liquid hybridization of PCR amplified Ig/TCR gene rearrangements using clone-specific radioactive probes. In RQ-PCR the generated specific PCR product is measured at each cycle ('real-time') by cleavage of a fluorogenic intrinsic TaqMan probe. The junctional regions of rearranged Ig/TCR genes define the specificity and sensitivity of PCR-based MRD detection in ALL and are generally used to design a patient-specific probe. In the TaqMan technology we have chosen for the same approach with the design of patient-specific TaqMan probes at the position of the junctional regions. We developed primers/probe combinations for RQ-PCR analysis of a total of three IGH, two TCRD, two TCRG and three IGK gene rearrangements in four randomly chosen precursor-B-ALL. In one patient, 12 bone marrow follow-up samples were analyzed for the presence of MRD using an IGK PCR target. The sensitivity of the RQ-PCR technique appeared to be comparable to the dot-blot method, but less sensitive than liquid hybridization. Although it still is a relatively expensive method, RQ-PCR allows sensitive, reproducible and quantitative MRD detection with a high throughput of samples providing possibilities for semi-automation. We consider this novel technique as an important step forward towards routinely performed diagnostic MRD studies.     

The glass transition temperature of star-shaped polystyrenes

The glass transition temperatures of linear and four- and six-branched regular star polystyrenes are measured by penetration, differential scanning calorimetry, and a density gradient technique. The results of the three methods show that the glass transition temperature depends on the concentration of chain ends in the polymer sample. An attempt is made to assess the influence of the presence of the branch point on the glass transition temperature using a series of four-branched polystyrenes containing varying amounts of isoprene near the branch point. However, any effect of the central branch point on the glass transition temperature is obscured by plastification of polystyrene by polyisoprene.     

Estimation of the contribution of tube renewal in the terminal relaxation of linear polybutadiene

A set of low-molecular-weight (low-MW) entangled linear polybutadienes with molecular weights between 1.1 × 10⁴ and 2.5 × 10⁵ have been dilutedly embedded in a high-molecular-weight linear polybutadiene (M_w = 7.6 · 10⁵) matrix. The viscoelastic properties of these blends with 9.1% low-MW polymer have been measured. The loss moduli-frequency master curves, G^″ (Щ), contain contributions from both polymers. The contribution of the low-MW polymer is obtained by subtracting the contribution of the matrix. The maximum in G^″, G^″_m, due to the low-MW polymer occurs at a lower frequency (0.3 to 0.5 log units) than in the homopolymer. This result indicates that the longest relaxation time of the entangled linear polymer embedded in a high-molecular-weight matrix is increased by a factor of 2.0 to 3.0 because tube renewal normally operating in the homopolymer is almost completely absent in the matrix. The longest relaxation time of the polymers in the matrix depends on M^3.3₀. This is only slightly less than the dependence found in linear polymer melts (M^3.3₇). This indicates that reptation and chain-end fluctuation together contribute to the relaxation of linear polymers in permanent networks.