Determination of hemin-binding characteristics of proteins by a combinatorial peptide library approach

Studies of the binding of heme/hemin to proteins or peptides have recently intensified as it became evident that heme serves not only as a prosthetic group, but also as a regulator and effector molecule interacting with transmembrane and cytoplasmic proteins. The iron‐ion‐containing heme group can associate with these proteins in different ways, with the amino acids Cys, His, and Tyr allowing individual modes of binding. Strong coordinate‐covalent binding, such as in cytochrome c, is known, and reversible attachment is also discussed. Ligands for both types of binding have been reported independently, though sometimes with different affinities for similar sequences. We applied a combinatorial approach using the library (X)₄(C/H/Y)(X)₄ to characterize peptide ligands with considerable hemin binding capacities. Some of the library‐selected peptides were comparable in terms of hemin association independently of whether or not a cysteine residue was present in the sequence. Indeed, a preference for His‐based (≈39 %) and Tyr‐based (≈40 %) sequences over Cys‐based ones (≈21 %) was detected. The binding affinities for the library‐selected peptides, as determined by UV/Vis spectroscopy, were in the nanomolar range. Moreover, selected representatives efficiently competed for hemin binding with the human BK channel hSlo1, which is known to be regulated by heme through binding to its heme‐binding domain.     

Autoproteolytic fragments are intermediates in the oligomerization/aggregation of the Parkinson's disease protein alpha-synuclein as revealed by ion mobility mass spectrometry

Gas-phase protein separation by ion mobility: With its ability to separate the Parkinson's disease protein α-synuclein and its autoproteolytic products-despite the small concentrations of the latter-ion-mobility MS has enabled the characterization of intermediate fragments in in vitro oligomerization-aggregation. In particular, a possible key fragment, the highly aggregating C-terminal fragment, αSyn(72-140), has been revealed.     

Conceptually new entries into cells

This article summarizes the background and a few preliminary results concerning project 7 of the NCCR Chemical Biology. The general objective is to explore new concepts for cellular uptake, membrane tunneling, sensing and labeling. Emphasis is on the use of dynamic covalent chemistry for counterion activation, slow release of polyions and fluorescent probes, and the generation of activator libraries and polyions that grow and shrink.     

Discrete element analysis of experiments on mixing and stoking of monodisperse spheres on a grate

Understanding the details of the mixing and stoking process on grate firing systems is crucial for the optimization of the combustion process in waste or biomass incineration plants. The Discrete Element Method (DEM) can help to obtain further information on the mixing process within a bed of fuel particles. Especially the influence of a change in operational parameters can be examined avoiding large experimental effort. In the current paper five simulations for a generic grate are compared with the corresponding experiments. The experiments were carried out throughout an anterior parameter study on mixing and stoking on a grate [Sudbrock F.; Simsek E.; Wirtz S.; Scherer V.: “An experimental analysis of the influence of operational parameters on mixing and stoking of a monodisperse granulate on a grate”, Powder Technology 198, Issue 1, 29-37, 2010] [19]. The system considered is equipped with vertically moving bars which induce stoking. In a first approach monodisperse plastic spheres are used. The grate is encased by a transparent polycarbonate housing which provides optical access to the movement of the particles in the wall planes. The mixing process is measured and quantified by image analysis of the front wall of the grate. The mixing behaviour of the particle assembly observed in experiments and simulation appears to be very similar indicating that DEM is able to predict the particle mixing in the bed. In order to quantify the visual observations the mixing behaviour has been evaluated by different mixing parameters. They are compared in dependence of the number of strokes of the grate bars. A good agreement between measurements and simulations could be observed.     

Selective Hydrolysis of Arabinogalactan into Arabinose and Galactose Over Heterogeneous Catalysts

Abstract  

The application of solid acid catalysts for the production of monomers from hemicelluloses can be one of the key steps in developing the concept of an integrated forest biorefinery. Arabinogalactans (AG) are hemicelluloses which can be extracted on an industrial scale from larch wood species and has a great potential as a sustainable feedstock for bio-based products. Hydrolysis of AG to monomers over acidic heterogeneous catalysts (Smopex-101 and Amberlyst 15) was successfully demonstrated for the first time to selectively produce arabinose as the primary product, followed by the release of galactose without further degradation of the monomers.     

Au dissolution during the anodic response of short-chain alkylthiols with polycrystalline Au electrodes

The electrochemical characteristics of polycrystalline Au in LiClO₄ electrolyte solutions containing 3-mercaptopropionic acid (MPA) or meso-2,3-dimercaptosuccinic acid (DMSA) were studied with linear sweep voltammetry (LSV) and electrochemical impedance spectroscopy (EIS) over a wide range of positive potentials vs. Ag/AgCl. The EIS data exhibited linear capacitive behaviour at 0.0 V with either MPA or DMSA added directly to the electrolyte suggesting the formation of an adsorbed layer of the alkylthiol on the electrode surface. Above this potential, a single well-defined impedance loop appeared for electrolyte solutions containing DMSA or MPA, an observation indicative of a charge transfer reaction that could be related to several processes including oxidative desorption, oxidation of the alkylthiol, or Au oxidation/dissolution. To test for Au dissolution, the electrode was held at 0.8 V vs. Ag/AgCl for 12 h in electrolytes containing MPA or DMSA followed by surface analysis with Atomic Force Microscopy and solution analysis with Atomic Absorption Spectroscopy. When the electrolyte contained MPA, the extended potential holding procedure resulted in significant roughening of the electrode with no detectable quantities of Au in the electrolyte. X-ray photoelectron spectroscopy (XPS) analysis of the Au surface revealed an additional species in the Au 4f_7/2 spectrum indicating the presence of an insoluble electrochemically generated Au(I)–MPA species. When the electrolyte contained DMSA, the Au electrode appeared smoother, 56.6 ± 9.6 ppb of Au was detected in the electrolyte and the XPS analysis displayed a single species in the Au 4f_7/2 spectrum indicative of metallic Au after the potential holding procedure. Both observations with MPA and DMSA support the charge transfer resistance to be at least partially related to the corrosion of Au, but also suggest that an electrochemically generated Au–DMSA species is soluble and of potential industrial relevance.     

Yttrium doping of Ba0.5Sr0.5Co0.8Fe0.2O3-δ part II: Influence on oxygen transport and phase stability

Ba_0.5Sr_0.5Co_0.8Fe_0.2O_3-δ (BSCF) in its cubic perovskite phase has attracted much interest for potential use as oxygen transport membrane (OTM) due to its very high oxygen permeability at high temperatures. However, performance degradation due to a sluggish phase decomposition occurs when BSCF is operated below 840?°C. Partial B-site substitution of the transition metal cations in BSCF by larger and redox-stable cations has emerged as a potential strategy to improve the structural stability of cubic BSCF. In this study, the influence of yttrium doping (0…10?mol-%) on oxygen transport properties and stability of the cubic BSCF phase is assessed by in situ electrical conductivity relaxation (ECR) and electrical conductivity measurements during long-term thermal annealing both at 700?°C and 800?°C. Detailed phase analysis is performed by scanning electron microscopy (SEM) after long-term annealing of the samples in air at different temperatures.     

Microbial Upgrading of Acetate into Value-Added Products—Examining Microbial Diversity,Bioenergetic Constraints and Metabolic Engineering Approaches

Ecological concerns have recently led to the increasing trend to upgrade carbon contained in waste streams into valuable chemicals. One of these components is acetate. Its microbial upgrading is possible in various species, with Escherichia coli being the best-studied. Several chemicals derived from acetate have already been successfully produced in E. coli on a laboratory scale, including acetone, itaconic acid, mevalonate, and tyrosine. As acetate is a carbon source with a low energy content compared to glucose or glycerol, energy- and redox-balancing plays an important role in acetate-based growth and production. In addition to the energetic challenges, acetate has an inhibitory effect on microorganisms, reducing growth rates, and limiting product concentrations. Moreover, extensive metabolic engineering is necessary to obtain a broad range of acetate-based products. In this review, we illustrate some of the necessary energetic considerations to establish robust production processes by presenting calculations of maximum theoretical product and carbon yields. Moreover, different strategies to deal with energetic and metabolic challenges are presented. Finally, we summarize ways to alleviate acetate toxicity and give an overview of process engineering measures that enable sustainable acetate-based production of value-added chemicals.     

Notwendigkeit und Vermarktung von Flexibilitätsoptionen im Energiesystem der Zukunft

Demands on production, distribution and consumption of electrical energy change fundamentally with the energy revolution. Energy purchasing costs for inflexible consumers are rising and proceeds of inflexible producers are sinking. Companies are able to reduce costs by marketing operational flexibility options. This article sets out the need of flexibility in the energy system and the new marketing options. Flexibility potentials within infrastructure plants of a chemical park are analyzed, evaluated regarding marketing and activated in the presented research project FlexChemistry.     

Studying Fluid Characteristics Atop Surface Patterned Membranes via Particle Image Velocimetry

Surface patterning is a recent promising approach to promote performance of pressure-driven membranes in water treatment and desalination. Nevertheless, knowledge about foulant deposition mechanisms, especially at early stage of filtration, is still lacking. The applicability of particle imaging velocimetry to study fluid characteristics atop surface patterned thin-film composite membranes was investigated at different operating conditions. This work is an important first step toward reliable understanding of the impacts of topographical membrane surface modification on hydrodynamic conditions and foulant deposition mechanisms.