Parallel Simulated Annealing Algorithms

Simulated annealing (SA) has been considered a good tool for complex nonlinear optimization problems. The technique has been widely applied to a variety of problems. However, a major disadvantage of the technique is that it is extremely slow and hence not suitable for complex optimization problems such as scheduling. There are many attempts to develop parallel versions of the algorithm. Many of these algorithms are problem dependent in nature. We present, in this paper, two general algorithms for SA. The algorithms have been applied to job shop scheduling problem (JSS) and the traveling salesman problem (TSP) and it has been observed that it is possible to achieve superlinear speedups using the algorithm.     

Clarification of suspensions by colloidal gas aphrons

Colloidal gas aphrons (CGAs), generated from dilute solutions of four surfactants, were used to clarify palm oil mill effluent (POME), suspensions of microalgae and suspensions of three inorganic minerals. In POME and the algal suspensions, each CGA was most effective at a pH value close to the pK value of the surfactant concerned. This effect was not tested in the inorganic suspensions. The efficiency of air utilization was directly related to the concentration of solids in the suspensions, the size, density and nature of the solids having secondary effects. Comparison with data in the literature led to a general correlation embracing a variety of suspensions and flotation systems. Shedding of collected material from the foam layer was also a direct function of solids concentration. CGAs offer advantages over other systems of air-assisted flotation in relation to the requirements for equipment and to the management of process operations.     

GS32, a novel Golgi SNARE of 32 kDa, interacts preferentially with syntaxin 6

Syntaxin 1, synaptobrevins or vesicle-associated membrane proteins, and the synaptosome-associated protein of 25 kDa (SNAP-25) are key molecules involved in the docking and fusion of synaptic vesicles with the presynaptic membrane. We report here the molecular, cell biological, and biochemical characterization of a 32-kDa protein homologous to both SNAP-25 (20% amino acid sequence identity) and the recently identified SNAP-23 (19% amino acid sequence identity). Northern blot analysis shows that the mRNA for this protein is widely expressed. Polyclonal antibodies against this protein detect a 32-kDa protein present in both cytosol and membrane fractions. The membrane-bound form of this protein is revealed to be primarily localized to the Golgi apparatus by indirect immunofluorescence microscopy, a finding that is further established by electron microscopy immunogold labeling showing that this protein is present in tubular-vesicular structures of the Golgi apparatus. Biochemical characterizations establish that this protein behaves like a SNAP receptor and is thus named Golgi SNARE of 32 kDa (GS32). GS32 in the Golgi extract is preferentially retained by the immobilized GST-syntaxin 6 fusion protein. The coimmunoprecipitation of syntaxin 6 but not syntaxin 5 or GS28 from the Golgi extract by antibodies against GS32 further sustains the preferential interaction of GS32 with Golgi syntaxin 6.     

Knowledge-based design of a soluble bacteriorhodopsin

Much knowledge has been accrued from high resolution protein structures. This knowledge provides rules and guidelines for the rational design of soluble proteins. We have extracted these rules and applied them to redesigning the structure of bacteriorhodopsin and to creating blueprints for a monomeric, soluble seven-helix bundle protein. Such a protein is likely to have desirable properties, such as ready crystallization, which membrane proteins lack and an internal structure similar to that of the native protein. While preserving residues shown to be necessary for protein function, we made modifications to the rest of the sequence, distributing polar and charged residues over the surface of the protein to achieve an amino acid composition as akin to that of soluble helical proteins as possible. A secondary goal was to increase apolar contacts in the helix intercalation regions of the protein. The scheme used to design the model sequences requires knowledge of the number and orientation of helices and some information about interior contacts, but detailed structural knowledge is not required to use a scheme of this type.      

InAs/AlSb/GaSb resonant interband tunneling diodes andAu-on-InAs/AlSb-superlattice Schottky diodes for logic circuits

Integrated resonant interband tunneling (RIT) and Schottky diode structures, based on the InAs/GaSb/AlSb heterostructure system, are demonstrated for the first time. The RIT diodes are advantageous for logic circuits due to the relatively low bias voltages (~100 mV) required to attain peak current densities in the mid-10⁴ A/cm ² range. The use of n-type InAs/AlSb superlattices for the semiconducting side of Schottky barrier devices provides a means for tailoring the barrier height for a given circuit architecture. The monolithically integrated RIT/Schottky structure is suitable for fabrication of a complete diode logic family (AND, OR, XOR, INV)     

Nuclear magnetic resonance spectral analysis of polymer-supported reagents and catalysts

High resolution and cross-polarisation/magic angle spinning nuclear magnetic resonance spectroscopy of crosslinked polystyrene and of reagents and catalysts supported on crosslinked polystyrene and silica gel are reviewed. The materials studied include ionexchange resins, resins in solid phase peptide synthesis, organic synthetic reagents, phase transfer catalysts, transition metal catalysts, and liquid chromatography column packings. ¹³C and ³¹P n.m.r. spectra have been used to identify structures and to study macromolecule and micromolecule dynamics. New spectra of crosslinked polystyrenes and supported reagents are reported. Procedure to obtain qualitative and quantitative spectra are recommended.