Inhibition of HIV-1 by a peptide ligand of the genomic RNA packaging signal Psi

The interaction of the nucleocapsid NCp7 of the human immunodeficiency virus type 1 (HIV-1) Gag polyprotein with the RNA packaging signal Psi ensures specific encapsidation of the dimeric full length viral genome into nascent virus particles. Being an essential step in the HIV-1 replication cycle, specific genome encapsidation represents a promising target for therapeutic intervention. We previously selected peptides binding to HIV-1 Psi-RNA or stem loops (SL) thereof by phage display. Herein, we describe synthesis of peptide variants of the consensus HWWPWW motif on membrane supports to optimize Psi-RNA binding. The optimized peptide, psi-pepB, was characterized in detail with respect to its conformation and binding properties for the SL3 of the Psi packaging signal by NMR and tryptophan fluorescence quenching. Functional analysis revealed that psi-pepB caused a strong reduction of virus release by infected cells as monitored by reduced transduction efficiencies, capsid p24 antigen levels, and electron microscopy. Thus, this peptide shows antiviral activity and could serve as a lead compound to develop new drugs targeting HIV-1.     

Transient thermal behaviour of a cylindrical wood particle during devolatilization in a bubbling fluidized bed

This work proposes a transient heat transfer model to predict the thermal behaviour of wood in a heated bed of sand fluidized with nitrogen. The 2-D model in cylindrical coordinates considers wood anisotropy, variable fuel properties, fuel particle shrinkage, and heat generation due to drying and devolatilization. The influence of initial fuel moisture content, thermal diffusivity, particle geometry, shrinkage, external heat transfer coefficient, chemical reaction kinetics and heats of reaction on temperature rise is presented. The cylindrical wood particles chosen for the study have length (l) = 20 mm, diameter (d) = 4 mm and l = 50 mm and d = 10 mm, both having an aspect ratio (l/d) of 5. The bed temperature is 1123 K. The model prediction is validated using measurements obtained from literature. The temperature rise in the wood particle is found to be sensitive to changes in the moisture content and thermal diffusivity and heat of reaction (in larger particles) while it is less sensitive to the external heat transfer coefficient and chemical kinetics. Also shrinkage is found to have a compensating effect and it does not have any significant influence on the temperature rise. Beyond an aspect ratio of three, the wood particle behaves as a 1-D cylinder.     

Yield and yield components of cowpea (<Emphasis Type="Italic">Vigna unguiculata</Emphasis> (L.) Walp.) as influenced by Sokoto phosphate rock and placement methods in the semi-arid zone of Nigeria

Phosphate rock with proper management could be a sustainable source of phosphorus for increased cowpea production on the Entisols of Sokoto Semi-arid zone. Therefore, field experiments were conducted in 2004 and 2005 rainy seasons to determine the influence of Sokoto phosphate rock (SPR) and placement methods on the yield of cowpea varieties. Treatments consisted of factorial combination of two varieties (Ba’adare and IAR48), three levels of SPR (25, 50 and 75 kg SPR ha⁻¹) along with a control (0 kg SPR ha⁻¹) and three placement methods (plough sole, broadcast and side-band) laid out in a randomized complete block design replicated 3 times. Results of phosphate rock and placement methods are presented in this paper. The study indicated significant (P < 0.01) response to applied SPR compared to control (1074 kg grain ha⁻¹) in most parameters studied. Application of 25 kg SPR ha⁻¹ significantly (P < 0.05) influenced higher pod yield and number of pods plant⁻¹ only in 2004 trial. But, shelling percentage, grain yield, stover yield, 1000-grain weight, harvest index (HI) and number of seeds pods⁻¹ were not influenced by SPR levels. Significantly (P < 0.05) higher pod yield in 2004, grain yield, 1000-grain weight and number of pods per plant in 2004 and 2005, HI, shelling percentage and number of seeds pod⁻¹ in 2005, were observed in plough-sole than broadcast and band-side methods of fertilizer placement. Therefore, from this study, it was concluded that SPR could be directly used as a source of P to sustain cowpea production (1527 kg grain ha⁻¹ with 25 kg SPR compared to 1074 kg ha⁻¹with 0 kg SPR). Application of 25 kg SPR ha⁻¹ (3.74 kg P ha⁻¹) using plough-sole method of fertilizer placement was most efficient under Sokoto semi-arid condition.     

Degradable Superhydrophilic Iron-Pillared Bentonite Doped with Polybutylene Adipate/Terephthalate Open-Cell Foam: Its Application in Dye Degradation,Removal of Heavy Metal Ions,and Oil–Water Separation

Development of industrialization has brought convenience to people's lives; however, it has also brought serious harm to the environment, where, water pollution is the most obvious. Here, a polybutylene adipate terephthalate (PBAT) open-cell foam doped with iron-pillared bentonite (IPB) is prepared by using sugar as a pore-forming agent and solution phase separation, and then combined with a solution dipping method to coat the foam surface with a polyacrylamide/SiO₂, which makes the PBAT foam superhydrophilic. The static adsorption effect of superhydrophilic IPB-doped PBAT open-cell foam on methylene blue (MB) and Cu²⁺ is studied. The adsorption isotherm fitting shows that the adsorption conforms to the Langmuir model and it has biased toward monolayer adsorption. The adsorption kinetics fitting confirms that the adsorption process is in line with the pseudo-second-order adsorption model, which is dominated by chemical adsorption. The modified PBAT open-cell foam has an adsorption effect on Cu²⁺; however, it has weak cyclic adsorption capacity. It shows a good cyclic adsorption ability for the cationic dye MB and it has >95% photodegradation efficiency of the MB after five time's cyclic adsorption. The superhydrophilicity makes the foam to have better applications in oil–water separation.     

Producing High-Quality Titanium Alloy by a Cost-Effective Route Combining Fast Heating and Hot Processing

Powder metallurgy is a very attractive method for producing titanium alloys, which can be near-net-shape formed and have freedom in composition selection. However, applications are still limited due to product affordability. In this paper, we will discuss a possible cost-effective route, combining fast heating and hot processing, to produce titanium alloys with similar or even better mechanical properties than that of ingot metallurgy titanium alloys. Two titanium alloys, Ti-5Al-5V-5Mo-3Cr (Ti-5553) and Ti-5Fe, were successfully produced from HDH titanium powder and other master alloy powders using the proposed processing route. The effect of the processing route on microstructural variation and mechanical properties have been discussed.     

Production of isobutylene from acetone over micro–mesoporous catalysts

The production of isobutylene from acetone over micro–mesoporous catalysts with different mesopore contents, which have been prepared using hydrothermal recrystallization of mordenite (MOR) zeolite modified with cesium acetate by incipient wetness impregnation, has been studied. It has been shown that cesium is inserted into the cation positions during the modification, at the same time the number of Brønsted acid sites in the samples decreased. It has been found that an increase in the content of mesopores in the catalyst leads to an increase in the initial rates of acetone conversion and isobutylene formation as a result of removing diffusion limitations. Brønsted acid sites have been shown to be preferable for the selective production of isobutylene from acetone. Micro–mesoporous materials operate more stably as compared to microporous materials.     

Predictive models for dry weight estimation of above and below ground biomass components of Populus deltoides in India: Development and comparative diagnosis

This article concentrates on development of statistical models for prediction of biomass components (above and below ground) of standing trees of Populus deltoides. Twenty seven trees (three each from age one to nine years) were destructively harvested, separated, sorted, sub-sampled, dried to constant weight at 60 °C and weighted for biomass components (leaf, twig, branch, bole, stump root, lateral root, fine root). Harvesting in a similar manner, was continued annually up to nine years of tree age and thus in all 27 sampled trees were available for analysis and fitting of models. Diameter at breast height (dbh) alone was a very good predictor of dry weight and accordingly the height was not included in the model. Various functions viz (linear, allometric, logistic, gompertz and chapman-richards), were attempted for dry weight estimation. The linear model, though easiest to fit, suffered from the ‘negative estimation problem’, specifically for the lower range of explanatory variate. Of the remaining non-linear models, the allometric model outperformed the others on the basis of validation criterions. The value of R² ranged from 0.95 to 0.99, for the allometric models fitted on various biomass components. The proposed models can be used for prediction of component wise dry biomass of P. deltoides for a wide range of dbh values (1-50 cm) at one end and can also help farmers in the choice of economical harvest rather than the traditional physical rotation. In addition, they can be used in carbon sequestration studies, which needs complete biomass estimation.     

Assessment of an active-cooling micro-channel heat sink device,using electro-osmotic flow

Non-uniform heat flux generated by microchips causes “hot spots” in very small areas on the microchip surface. These hot spots are generated by the logic blocks in the microchip bay; however, memory blocks generate lower heat flux on contrast. The goal of this research is to design, fabricate, and test an active cooling micro-channel heat sink device that can operate under atmospheric pressure while achieving high-heat dissipation rate with a reduced chip-backside volume, particularly for spot cooling applications. An experimental setup was assembled and electro-osmotic flow (EOF) was used thus eliminating high pressure pumping system. A flow rate of 82 μL/min was achieved at 400 V of applied EOF voltage. An increase in the cooling fluid (buffer) temperature of 9.6 °C, 29.9 °C, 54.3 °C, and 80.1 °C was achieved for 0.4 W, 1.2 W, 2.1 W, and 4 W of heating powers, respectively. The substrate temperature at the middle of the microchannel was below 80.5 °C for all input power values. The maximum increase in the cooling fluid temperature due to the joule heating was 4.5 °C for 400 V of applied EOF voltage. Numerical calculations of temperatures and flow were conducted and the results were compared to experimental data. Nusselt number (Nu) for the 4 W case reached a maximum of 5.48 at the channel entrance and decreased to reach 4.56 for the rest of the channel. Nu number for EOF was about 10% higher when compared to the pressure driven flow. It was found that using a shorter channel length and an EOF voltage in the range of 400–600 V allows application of a heat flux in the order of 10⁴ W/m², applicable to spot cooling. For elevated voltages, the velocity due to EOF increased, leading to an increase in total heat transfer for a fixed duration of time; however, the joule heating also got elevated with increase in voltage.     

Identification of critical erosion prone areas in the small agricultural watershed using USLE,GIS and remote sensing

In the present study, Karso watershed of Hazaribagh, Jharkhand State, India was divided into 200 × 200 grid cells and average annual sediment yields were estimated for each grid cell of the watershed to identify the critical erosion prone areas of watershed for prioritization purpose. Average annual sediment yield data on grid basis was estimated using Universal Soil Loss Equation (USLE). In general, a major limitation in the use of hydrological models has been their inability to handle the large amounts of input data that describe the heterogeneity of the natural system. Remote sensing (RS) technology provides the vital spatial and temporal information on some of these parameters. A recent and emerging technology represented by Geographic Information System (GIS) was used as the tool to generate, manipulate and spatially organize disparate data for sediment yield modeling. Thus, the Arc Info 7.2 GIS software and RS (ERDAS IMAGINE 8.4 image processing software) provided spatial input data to the erosion model, while the USLE was used to predict the spatial distribution of the sediment yield on grid basis. The deviation of estimated sediment yield from the observed values in the range of 1.37 to 13.85 percent indicates accurate estimation of sediment yield from the watershed.     

Phytoplankton as biomonitors: A study of Museum Lake in Government Botanical Garden and Museum,Thiruvananthapuram, Kerala India

An assessment of the pollution status of Museum Lake in the Thiruvananthapuram Botanical Garden and Museum was conducted. Analysis of different community structures of the planktonic taxa in the lake revealed it is organically polluted, attributable to the organic litter from riparian vegetation. A total of 30 most pollution‐tolerant phytoplankton genera and 24 pollution‐tolerant species were identified. Pollution‐tolerant phytoplankton genera in the lake included Chlorophyceae, Bacillariophyceae, Cyanophyceae and Euglenophyceae. Scenedesmus, Pinnularia, Euglena, Ankistrodesmus, Closterium, Crucigenia, Kirchneriella, Merismopedia and Oscillatoria were some of the phytoplankton pollution tolerant genera whereas, Nitzschia palea, Synedra acus, Scenedesmus quadricauda, Pandorina morum and Trachelomonas volvocina were some of the pollution tolerant species noted. Excessive nutrient loading from the surrounding area is definitely degrading the quality of this urban lake ecosystem. Detailed information regarding the pollution status of a waterbody is very important in this regard, noting it ultimately assists in undertaking proper management of a waterbody. The Palmer Algal Index score for Museum Lake was 37, indicating it is highly organic enriched. The results of different algal indices (e.g. Chlorophycean Index; Nygaard Index) indicated a eutrophic condition for Museum Lake, being attributed to its increased organic enrichment. Canonical correspondence analysis between environmental variables and the microalgal bioindicators also highlighted the influence of the physical and chemical parameters on phytoplankton abundance and distribution in Museum Lake.