Adjacent assembly of self-assembled monolayers for the construction of selective bio-platforms

Selective patterning of bio-substances onto solid platforms is of increasing importance in many areas and widely used for various applications ranging from bio-sensing to cell and tissue engineering. In this study, a new fabrication scheme for the construction of highly selective bio-platforms is presented. The method is based on a direct patterning of poly(ethyleneglycol) (PEG) bio-inert layers on a conducting indium tin oxide (ITO) substrate using electron beam lithography and subsequent assembly of modified amine reactive layers onto the exposed areas. The process is found to create very high “surface contrast” between adhesive and repulsive regions onto the substrate. The platforms are shown to be enable efficient for selective adsorption of a variety of bio-substances including protein arrays, latex beads, and single cells. The high resolution of the technique makes it also applicable for the construction and deposition of bio-structures at the sub-micron scale. The reported technique employs standard lithography and surface chemistry processes, which makes it useful and easy to adopt for a variety of applications and other conductive substrates.     

A dynamic attribute-based data filtering and recovery scheme for web information processing

Web data being transmitted over a network channel on the Internet with excessive amount of data causes data processing problems, which include selectively choosing useful information to be retained for various data applications. In this paper, we present an approach for filtering less-informative attribute data from a source Website. A scheme for filtering attributes, instead of tuples (records), from a Website becomes imperative, since filtering a complete tuple would lead to filtering some informative, as well as less-informative, attribute data in the tuple. Since filtered data at the source Website may be of interest to the user at the destination Website, we design a data recovery approach that maintains the minimal amount of information for data recovery purpose while imposing minimal overhead for data recovery at the source Website. Our data filtering and recovery approach (1) handles a wide range of Web data in different application domains (such as weather, stock exchanges, Internet traffic, etc.), (2) is dynamic in nature, since each filtering scheme adjusts the amount of data to be filtered as needed, and (3) is adaptive, which is appealing in an ever-changing Internet environment.     

Express Virtual Channels with Capacitively Driven Global Links

Networks on chip must deliver high bandwidth at low latencies while keeping within a tight power envelope. Using express virtual channels for flow control improves energy-delay throughput by letting packets bypass intermediate routers, but EVCs have key limitations. Nochi (NoC with hybrid interconnect) overcomes these limitations by transporting data payloads and control information on separate planes, optimized for bandwidth and latency respectively.     

Differential regulation of redox proteins and chaperones in HbEβ-thalassemia erythrocyte proteome

Purpose: In (hemoglobin, Hb) HbEβ‐thalassemia, HbE (β‐26 Glu→Lys) interacts with β‐thalassemia to produce clinical manifestation of varying severity. This is the first proteomic effort to study changes in protein levels of erythrocytes isolated from HbEβ‐thalassemic patients compared to normal. Experimental design: We have used 2‐DE and MALDI‐MS/MS‐based techniques to investigate the differential proteome profiling of membrane and Hb‐depleted fraction of cytosolic proteins of erythrocytes isolated from the peripheral blood samples of HbEβ‐thalassemia patients and normal volunteers. Results: Our study showed that redox regulators such as peroxiredoxin 2, Cu‐Zn superoxide dismutase and thioredoxin and chaperones such as α‐hemoglobin stabilizing protein and HSP‐70 were upregulated in HbEβ‐thalassemia. We have also observed larger amounts of membrane associated globin chains and indications of disruption of spectrin‐based junctional complex in the membrane skeleton of HbEβ‐thalassemic erythrocytes upon detection of low molecular weight fragments of β‐spectrin and decrease in β‐actin and dematin content. Conclusion and clinical relevance: We have observed interesting changes in the proteomic levels of redox regulators and chaperons in the thalassemic hemolysates and have observed strong correlation or association of the extent of such proteomic changes with HbE levels. This could be important in understanding the role of HbE in disease progression and pathophysiology.     

On Scene Segmentation and Histograms-Based Curve Evolution

We consider curve evolution based on comparing distributions of features, and its applications for scene segmentation. In the first part, we promote using cross-bin metrics such as the Earth Mover's Distance (EMD), instead of standard bin-wise metrics as the Bhattacharyya or Kullback-Leibler metrics. To derive flow equations for minimizing functionals involving the EMD, we employ a tractable expression for calculating EMD between one-dimensional distributions. We then apply the derived flows to various examples of single image segmentation, and to scene analysis using video data. In the latter, we consider the problem of segmenting a scene to spatial regions in which different activities occur. We use a nonparametric local representation of the regions by considering multiple one-dimensional histograms of normalized spatiotemporal derivatives. We then obtain semisupervised segmentation of regions using the flows derived in the first part of the paper. Our results are demonstrated on challenging surveillance scenes, and compare favorably with state-of-the-art results using parametric representations by dynamic systems or mixtures of them.     

An Optimizing Compiler for Parallel Chemistry Simulations

Well designed domain specific languages have three important benefits: (1) the easy expression of problems, (2) the application of domain specific optimizations (including parallelization), and (3) dramatic improvements in productivity for their users. In this paper we describe a compiler and parallel runtime system for modeling the complex kinetics of rubber vulcanization and olefin polymerization that achieves all of these goals. The compiler allows the development of a system of ordinary differential equations describing a complex vulcanization reaction or single-site olefin polymerization reaction—a task that used to require months—to be done in hours. A specialized common sub-expression elimination and other algebraic optimizations sufficiently simplify the complex machine generated code to allow it to be compiled—eliminating all but 8.0% of the operations in our largest program and enabling over 60 times faster execution on our largest benchmark codes. The parallel runtime and dynamic load balancing scheme enables fast simulations of the model.     

Perceptron training algorithms designed using discrete-time control Liapunov functions

Perceptrons, proposed in the seminal paper McCulloch–Pitts of 1943, have remained of interest to neural network community because of their simplicity and usefulness in classifying linearly separable data and can be viewed as implementing iterative procedures for “solving” linear inequalities. Gradient descent and conjugate gradient methods, normally used for linear equalities, can be used to solve linear inequalities by simple modifications that have been proposed in the literature but not been analyzed completely. This paper applies a recently proposed control-inspired approach to the design of iterative steepest descent and conjugate gradient algorithms for perceptron training in batch mode, by regarding certain parameters of the training/algorithm as controls and then using a control Liapunov technique to choose appropriate values of these parameters.     

Non-fragile robust optimal guaranteed cost control of uncertain 2-D discrete state-delayed systems

This paper is concerned with the problem of non-fragile robust optimal guaranteed cost control for a class of uncertain two-dimensional (2-D) discrete state-delayed systems described by the general model with norm-bounded uncertainties. Our attention is focused on the design of non-fragile state feedback controllers such that the resulting closed-loop system is asymptotically stable and the closed-loop cost function value is not more than a specified upper bound for all admissible parameter uncertainties and controller gain variations. A sufficient condition for the existence of such controllers is established under the linear matrix inequality framework. Moreover, a convex optimisation problem is proposed to select a non-fragile robust optimal guaranteed cost controller stabilising the 2-D discrete state-delayed system as well as achieving the least guaranteed cost for the resulting closed-loop system. The proposed method is compared with the previously reported criterion. Finally, illustrative examples are given to show the potential of the proposed technique.     

ILP-assisted de novo drug design

The accurate and early detection of epileptic seizures in continuous electroencephalographic (EEG) data has a growing role in the management of patients with epilepsy. Early detection allows for therapy to be delivered at the start of seizures and for caregivers to be notified promptly about potentially debilitating events. The challenge to detecting epileptic seizures, however, is that seizure morphologies exhibit considerable inter-patient and intra-patient variability. While recent work has looked at addressing the issue of variations across different patients (inter-patient variability) and described patient-specific methodologies for seizure detection, there are no examples of systems that can simultaneously address the challenges of inter-patient and intra-patient variations in seizure morphology. In our study, we address this complete goal and describe a multi-task learning approach that trains a classifier to perform well across many kinds of seizures rather than potentially overfitting to the most common seizure types. Our approach increases the generalizability of seizure detection systems and improves the tradeoff between latency and sensitivity versus false positive rates. When compared against the standard approach on the CHB–MIT multi-channel scalp EEG data, our proposed method improved discrimination between seizure and non-seizure EEG for almost 83 % of the patients while reducing false positives on nearly 70 % of the patients studied.     

A constrained non-linear optimization model for fuzzy pairwise comparison matrices using teaching learning based optimization

Non-linear optimization models have been recently proposed to derive crisp weights from fuzzy pairwise comparison matrices. In this paper, a TLBO (Teaching Learning Based Optimization) based solution is presented for solving an optimization model as a system of non-linear equations to derive crisp weights from fuzzy pairwise comparison matrices in AHP (Analytic Hierarchy Process). This fuzzy-AHP method is named as TLBO-1. It has been found that TLBO-1 can lead to inconsistent or less consistent weights. To solve the problem of inconsistent weights, a new constrained non-linear optimization model is proposed in this paper. This model is based on the min-max approach for fuzzy pairwise comparison ratios of weights. TLBO is again used to solve this optimization model, and crisp weights are derived. This fuzzy AHP method is named as TLBO-2. The effectiveness of the proposed model is illustrated by three examples. For each example, the consistency of the derived crisp weights is compared with other optimization models. The results show that the TLBO-2 method can derive more consistent weights for the fuzzy AHP based Multi-Criteria Decision Making (MCDM) systems as compared to the other optimization models.