Electrochemical and XAFS studies of effects of carbonate on the oxidation of arsenite

Measurements of electrochemical (EC) arsenite oxidation demonstrated thatthe arsenite oxidation current increased in the presence of carbonate while the potential of the onset of EC arsenite oxidation exhibited a strong shift toward less positive values. Examination of pH and total carbonate concentration effects on the EC arsenite oxidation parameters showed that they were affected solely by the concentration of carbonate ion CO3(2-), which appeared to form relatively weak mono- and dicarbonate complexes with arsenite. The EC activity of these complexes was determined to be almost an order of magnitude higher than that of free arsenite. However, X-ray absorption fine-structure (XAFS) measurements did not show any changes in the properties of the As(III) inner complexation shell associated with the presence of the bound carbonate ions. It was accordingly concluded that the strength of bonds between the bound carbonate and As(III) is close to that for As(III)-OH- interactions. The acceleration of the oxidation of carbonate-As(III) complexes was hypothesized to be associated with an additional pathway of the formation of As(IV) intermediates, in which the carbonate group present in the As(III) inner shell provides an electron to form a bound carbonate radical and also a good leaving group for facile cleavage from the transient As(IV) species.     

Single-cell stochastic modelling of the action of antimicrobial peptides on bacteria

Antimicrobial peptides (AMPs) produced by multi-cellular organisms as their immune system’s defence against microbes are actively considered as natural alternatives to conventional antibiotics. Although substantial progress has been achieved in studying the AMPs, the microscopic mechanisms of their functioning remain not well understood. Here, we develop a new theoretical framework to investigate how the AMPs are able to efficiently neutralize bacteria. In our minimal theoretical model, the most relevant processes, AMPs entering into and the following inhibition of the single bacterial cell, are described stochastically. Using complementary master equations approaches, all relevant features of bacteria clearance dynamics by AMPs, such as the probability of inhibition and the mean times before the clearance, are explicitly evaluated. It is found that both processes, entering and inhibition, are equally important for the efficient functioning of AMPs. Our theoretical method naturally explains a wide spectrum of efficiencies of existing AMPs and their heterogeneity at the single-cell level. Theoretical calculations are also consistent with existing single-cell measurements. Thus, the presented theoretical approach clarifies some microscopic aspects of the action of AMPs on bacteria.     

Analog Section of a Hadron–Electron Separator of the ZEUS Experiment (DESY)

Some special design features of the detector part of a hadron–electron separator of the ZEUS detector (DESY, Hamburg, Germany) are described. The test results for the basic components of the analog section of the front part of the separator manufactured by Russian factories are given.     

Understanding the phase-change mechanism of rewritable optical media

Present-day multimedia strongly rely on rewritable phase-change optical memories. We demonstrate that, different from the current consensus, Ge(2)Sb(2)Te(5), the material of choice in DVD-RAM, does not possess the rocksalt structure but more likely consists of well-defined rigid building blocks that are randomly oriented in space consistent with cubic symmetry. Laser-induced amorphization results in drastic shortening of covalent bonds and a decrease in the mean-square relative displacement, demonstrating a substantial increase in the degree of short-range ordering, in sharp contrast to the amorphization of typical covalently bonded solids. This novel order-disorder transition is due to an umbrella-flip of Ge atoms from an octahedral position into a tetrahedral position without rupture of strong covalent bonds. It is this unique two-state nature of the transformation that ensures fast DVD performance and repeatable switching over ten million cycles.     

Remote chlorophyll-a retrieval in turbid, productive estuaries: Chesapeake Bay case study

Accurate remote assessment of phytoplankton chlorophyll a (chla) concentration is particularly challenging in turbid, productive waters. Recently a conceptual model containing reflectance in three spectral bands in the red and near infra-red range of the spectrum was suggested for retrieving chla concentrations in turbid productive waters; it was calibrated and validated in lakes and reservoirs in Nebraska and Iowa. The objective of this paper is to evaluate the performance of this three band model as well as its special case, the two-band model to estimate chla concentration in Chesapeake Bay, as representative of estuarine Case II waters, and to assess the accuracy of chla retrieval. To evaluate the model performance, dual spectroradiometers were used to measure subsurface spectral radiance reflectance in the visible and near infra-red range of the spectrum. Water samples were collected concurrently and contained widely variable chla (9 to 77.4 mg/m³) and total suspended solids (7-65 mg/L dry wt). Colored dissolved organic matter (CDOM) absorption at 440 nm was 0.20 to 2.50 m^− 1; Secchi disk transparency ranged from 0.28 to 1.5 m. The two- and three-band models were spectrally tuned to select the spectral bands for most accurate chla estimation. Strong linear relationships were established between analytically measured chla and both the three-band model [R^− 1(675)-R^− 1(695)] × R(730) and the two-band model R(720)/R(670), where R(λ) is reflectance at wavelength λ. The three-band model accounted for 81% of variation in chla and allowed estimation of chla with a root mean square error (RMSE) of less than 7.9 mg/m³, whereas the two-band model accounted for 79% of chla variability and RMSE of chla estimation was below 8.4 mg/m³. The three-band model with MERIS spectral bands allows accurate chla estimation with RMSE below 9.1 mg/m³. Two-band model with SeaWiFS bands and MODIS 667 nm and 748 nm bands can estimate chla with RMSE below 11 mg/m³. The findings underlined the rationale behind the conceptual model and demonstrated the robustness of this algorithm for chla retrieval in turbid, productive estuarine waters.