Evolution of carbohydrate metabolic pathways

Current studies of hyperthermophilic archaea and bacteria, the phylogenetically deepest-rooted and slowest-evolving extant organisms known, are allowing new insights into the nature of presumably ancient metabolic pathways. The apparent common occurrence of modified non-phosphorylated Entner-Doudoroff (ED) pathways among saccharolytic archaea and the absence of the conventional Embden-Meyerhof-Parnas (EMP) mode of glycolysis indicate that the ED pathway is the older route of carbohydrate dissimilation. However, gluconeogenesis via the "reversed" EMP route has been found in archaea. Thus, the EMP pathway was probably an anabolic pathway to begin with; its catabolic role came later, with the evolution of fructose phosphate kinases, using ATP, ADP or pyrophosphate as phosphate donors. Similarly, the presence of reductive reactions of the citric acid cycle in anaerobic archaea and the most deeply rooted bacteria, including autotrophs, indicates that the citric acid cycle was originally a reductive biosynthetic pathway.     

Effect of sinus denervation and vagotomy on c-fos expression in the nucleus tractus solitarius after exposure to CO2

Exposure to hypercapnia and electrical stimulation of the carotid sinus nerve (CSN) has been shown to induce c-fos expression in several brain stem regions including the nucleus tractus solitarius (NTS). To test whether the labeled neurons were activated directly by hypercapnia or secondarily via the carotid bodies (sinus nerve), adult rats were exposed to either air or 14-16% CO2 for 1 h. Experiments were done on eight groups: (1) exposure to air, (2) exposure to CO2, (3) chronic CSN denervation/CO2, (4) chronic unilateral CSN denervation/CO2, (5) chronic sham CSN denervation/CO2, (6) anesthetized/CO2, (7) anesthetized and acute vagotomy/CO2, and (8) premedicated with morphine, 10 mg s.c., 20 min before exposure to CO2. After exposure to CO2 or air the rats were anesthetized, perfused with 4% paraformaldehyde and the brains processed for immunohistochemical staining for c-fos protein using the PAP (i.e. peroxidase anti-peroxidase) technique. Labeled neurons in the area of the NTS in every second 50- "mu"m section were counted and their position plotted using a microscope and camera lucida attachment. Rats exposed to CO2 had a significantly greater number of labeled neurons in the NTS than those exposed to air. Other interventions, such as CSN denervation, surgery, anesthesia, vagotomy or injection of morphine did not significantly affect the level of c-fos expression in rats exposed to hypercapnia, indicative of central stimulation rather than secondary peripheral input. These responsive neurons may be part of a widespread central chemoreceptive complex.     

Severe facial clefting, limbic dermoid, hypoplasia of the corpus callosum, and multiple skin appendages: severe frontofacionasal "dysplasia" or newly recognised syndrome?

We report on a child with severe midline facial cleft, bilateral cleft lip and palate, telecanthus, S-shaped palpebral fissures, limbic dermoid, midface hypoplasia, hypoplastic corpus callosum, and multiple skin appendages. This case may be an example of severe frontofacionasal "dysplasia" or a newly recognised syndrome.     

Ambulatory urodynamics: extramural testing of the lower and upper urinary tract by Holter monitoring of cystometrogram, uroflowmetry, and renal pelvic pressures

This article elucidates the clinical applicability and state of the art of ambulatory urodynamics. Ambulatory urodynamics have evolved into practical investigations like EAC, HFM, and EAC combined with renal pelvimetry. EAC has been shown to be the method of preference if detrusor overactivity is involved. Conventional filling cystometry has proved to be an unreliable way to exclude detrusor instability. De novo instability after suspension surgery often indicates that an existing detrusor overactivity was not identified preoperatively. EAC including flowmetry has shown considerable variance in obstructive and contractility parameters in males with LUTS indicative for BPH. This raises doubt whether the clinical flow analysis is the suitable "gold standard" as advocated by the ICS. For a real break through of EAC, less complex automatic analysis is necessary. HFM is a newer method within the range of ambulatory urodynamic tests. It has not yet been completely evaluated. But, because the technique is analogous to the office flowmetry, noninvasive and very well accepted by the patients, it is expected to be widely used. This expectation is strengthened by the fact that HFM seems to show individual therapeutic efficacy of drugs, such as alpha-blockers. As a research tool to evaluate efficacy, it is far more powerful than conventional methods because of the reduction of within-patient standard deviation to about 10%. Finally, EAC combined with pelvimetry offers a promising method for the clinical evaluation of a combined dysfunction of upper and lower urinary tract.     

Adaptive discrete neural observer design for nonlinear systems with unknown time‐delay

This paper focuses on the adaptive observer design for nonlinear discrete‐time MIMO systems with unknown time‐delay and nonlinear dynamics. The delayed states involved in the system are arguments of a nonlinear function and only the estimated delay is utilized. By constructing an appropriate Lyapunov–Krasovskii function, the delay estimation error is considered in the observer parameter design. The proposed method is then extended to the system with a nonlinear output measurement equation and the delayed dynamics. With the help of a high‐order neural network (HONN), the requirement for a precise system model, the linear‐in‐the‐parameters (LIP) assumption of the delayed states, the Lipschitz or norm‐boundedness assumption of unknown nonlinearities are removed. A novel converse Lyapunov technical lemma is also developed and used to prove the uniform ultimate boundedness of the proposed observer. The effectiveness of the proposed results is verified by simulations. Copyright © 2010 John Wiley & Sons, Ltd.     

Ordinal regression by a gravitational model in the field of educational data mining

Educational data mining (EDM) is a research area where the goal is to develop data mining methods to examine data critically from educational environments. Traditionally, EDM has addressed the following problems: clustering, classification, regression, anomaly detection and association rule mining. In this paper, the ordinal regression (OR) paradigm, is introduced in the field of EDM. The goal of OR problems is the classification of items in an ordinal scale. For instance, the prediction of students' performance in categories (where the different grades could be ordered according to A ? B ? C ? D) is a classical example of an OR problem. The EDM community has not yet explored this paradigm (despite the importance of these problems in the field of EDM). Furthermore, an amenable and interpretable OR model based on the concept of gravitation is proposed. The model is an extension of a recently proposed gravitational model that tackles imbalanced nominal classification problems. The model is carefully adapted to the ordinal scenario and validated with four EDM datasets. The results obtained were compared with state‐of‐the‐art OR algorithms and nominal classification ones. The proposed models can be used to better understand the learning–teaching process in higher education environments.     

The sputtering behaviour of calcite

Optical and electron microscopy were used to study the effect of bombarding carbonate single crystals (mainly calcite) with argon ions from a cold cathode d.c. ion source operated at 5 kV. The sputtering yield, S, and the thickness , of the amorphous surface layer formed as a result of ion irradiation were the two quantities which were determined. The electron microscope method for measuring these parameters employed simple tilting and diffraction operations and it should therefore be applicable to other types of crystal. The variation of S as a function of the angle of incidence of the ion beam to the crystal surface was measured, with the crystal rotated to minimize possible channelling effects. In separate experiments it was found that channelling occurred along the 11¯20 and ¯4401 directions and that for these directions S was greatly reduced, while was large. The temperature of the target crystal was also shown to be an important factor in determining S and for calcite. This temperature effect is attributed to the indirect effect of chemical decomposition, with loss of carbon dioxide, rather than sputtering sensu stricto.     

A gantry-based tri-modality system for bioluminescence tomography

A gantry-based tri-modality system that combines bioluminescence (BLT), diffuse optical (DOT), and x-ray computed tomography (XCT) into the same setting is presented here. The purpose of this system is to perform bioluminescence tomography using a multi-modality imaging approach. As parts of this hybrid system, XCT and DOT provide anatomical information and background optical property maps. This structural and functional a priori information is used to guide and restrain bioluminescence reconstruction algorithm and ultimately improve the BLT results. The performance of the combined system is evaluated using multi-modality phantoms. In particular, a cylindrical heterogeneous multi-modality phantom that contains regions with higher optical absorption and x-ray attenuation is constructed. We showed that a 1.5 mm diameter bioluminescence inclusion can be localized accurately with the functional a priori information while its source strength can be recovered more accurately using both structural and the functional a priori information.     

Dynamics of flow of c-axis sapphire

The deformation dynamics in uniaxial tension of c-axis sapphire were investigated at temperatures from 1600 to 1850° C in constant strain-rate tests from 0.00007 min^–1 to 0.0036 min^–1. The activation parameters are consistent with thermally-activated overcoming of the Peierls barrier as the rate-controlling process for flow. From SEM, TEM, and HVTEM examinations of deformed specimens it is deduced that the active slip plane is of the {¯4223}-type. The dislocation structure suggests that the 0 ¯110 directions are the most likely slip directions.