Solving large sparse linear systems in a grid environment: the GREMLINS code versus the PETSc library

Solving large sparse linear systems is essential in numerous scientific domains. Several algorithms, based on direct or iterative methods, have been developed for parallel architectures. On distributed grids consisting of processors located in distant geographical sites, their performance may be unsatisfactory because they suffer from too many synchronizations and communications. The GREMLINS code has been developed for solving large sparse linear systems on distributed grids. It implements the multisplitting method that consists in splitting the original linear system into several subsystems that can be solved independently. In this paper, the performance of the GREMLINS code obtained with several libraries for solving the linear subsystems is analyzed. Its performance is also compared with that of the widely used PETSc library that enables one to develop portable parallel applications. Numerical experiments have been carried out both on local clusters and on distributed grids.     

ISS-Lyapunov functions for time-varying hyperbolic systems of balance laws

A family of time-varying hyperbolic systems of balance laws is considered. The partial differential equations of this family can be stabilized by selecting suitable boundary conditions. For the stabilized systems, the classical technique of construction of Lyapunov functions provides a function which is a weak Lyapunov function in some cases, but is not in others. We transform this function through a strictification approach to obtain a time-varying strict Lyapunov function. It allows us to establish asymptotic stability in the general case and a robustness property with respect to additive disturbances of input-to-state stability (ISS) type. Two examples illustrate the results.     

Genetic programming for multibiometrics

Biometric systems suffer from some drawbacks: a biometric system can provide in general good performances except with some individuals as its performance depends highly on the quality of the capture… One solution to solve some of these problems is to use multibiometrics where different biometric systems are combined together (multiple captures of the same biometric modality, multiple feature extraction algorithms, multiple biometric modalities…). In this paper, we are interested in score level fusion functions application (i.e., we use a multibiometric authentication scheme which accept or deny the claimant for using an application). In the state of the art, the weighted sum of scores (which is a linear classifier) and the use of an SVM (which is a non linear classifier) provided by different biometric systems provide one of the best performances. We present a new method based on the use of genetic programming giving similar or better performances (depending on the complexity of the database). We derive a score fusion function by assembling some classical primitives functions (+, ∗, −, … ). We have validated the proposed method on three significant biometric benchmark datasets from the state of the art.     

Monitoring of slow ground deformation by ERS radar interferometry on the Vauvert salt mine (France): Comparison with ground-based measurement

The differential SAR Interferometry (DInSAR) technique has been applied to a test site near Vauvert (France) to detect and monitor ground deformation. This site corresponds to the location of an industrial exploitation of underground salt using the solution mining technique. An area of subsidence has been observed using in situ measurements. Despite conditions unfavorable for InSAR because of the vegetal cover, we show that radar remote sensing observations provide valuable information which substantially improves our knowledge of the phenomenon. An adaptive phase filtering process has been used to improve the coherence level. In particular, our study shows that the geometry of the subsidence bowl is different to that previously assumed using ground-based techniques only. The size of the subsidence bowl (8 km) is larger than expected. This information will be useful for further modeling of the deformation and to improve the coverage of the in situ measurement networks. It also shows that radar interferometry can be used for the long-term monitoring of such sites and to predict potential environmental issues.     

Experience with a Hybrid Processor: K-Means Clustering

We discuss hardware/software co-processing on a hybrid processor for a compute- and data-intensive multispectral imaging algorithm, k-means clustering. The experiments are performed on two models of the Altera Excalibur board, the first using the soft IP core 32-bit NIOS 1.1 RISC processor, and the second with the hard IP core ARM processor. In our experiments, we compare performance of the sequential k-means algorithm with three different accelerated versions. We consider granularity and synchronization issues when mapping an algorithm to a hybrid processor. Our results show that speedup of 11.8X is achieved by migrating computation to the Excalibur ARM hardware/software as compared to software only on a Gigahertz Pentium III. Speedup on the Excalibur NIOS is limited by the communication cost of transferring data from external memory through the processor to the customized circuits. This limitation is overcome on the Excalibur ARM, in which dual-port memories, accessible to both the processor and configurable logic, have the biggest performance impact of all the techniques studied.     

A Novel Neurofilament Light Chain ELISA Validated in Patients with Alzheimer’s Disease,Frontotemporal Dementia,and Subjective Cognitive Decline,and the Evaluation of Candidate Proteins for Immunoassay Calibration

Neurofilament light chain (Nf-L) is a well-known biomarker for axonal damage; however, the corresponding circulating Nf-L analyte in cerebrospinal fluid (CSF) is poorly characterized. We therefore isolated new monoclonal antibodies against synthetic peptides, and these monoclonals were characterized for their specificity on brain-specific intermediate filament proteins. Two highly specific antibodies, ADx206 and ADx209, were analytically validated for CSF applications according to well-established criteria. Interestingly, using three different sources of purified Nf-L proteins, a significant impact on interpolated concentrations was observed. With a lower limit of analytical sensitivity of 100 pg/mL using bovine Nf-L as the calibrator, we were able to quantify the Nf-L analyte in each sample, and these Nf-L concentrations were highly correlated to the Uman diagnostics assay (Spearman rho = 0.97, p < 0.001). In the clinical diagnostic groups, the new Nf-L ELISA could discriminate patients with Alzheimer’s disease (AD, n = 20) from those with frontotemporal lobe dementia (FTD, n = 20) and control samples with subjective cognitive decline (SCD, n = 20). Henceforth, this novel Nf-L ELISA with well-defined specificity and epitopes can be used to enhance our understanding of harmonizing the use of Nf-L as a clinically relevant marker for neurodegeneration in CSF.     

Introduction to the Special Issue on Meta-Learning

Recent advances in meta-learning are providing the foundations to construct meta-learning assistants and task-adaptive learners. The goal of this special issue is to foster an interest in meta-learning by compiling representative work in the field. The contributions to this special issue provide strong insights into the construction of future meta-learning tools. In this introduction we present a common frame of reference to address work in meta-learning through the concept of meta-knowledge. We show how meta-learning can be simply defined as the process of exploiting knowledge about learning that enables us to understand and improve the performance of learning algorithms.     

Chelating Polymers for Targeted Decontamination of Actinides: Application of PEI-MP to Hydroxyapatite-Th(IV)

In case of an incident in the nuclear industry or an act of war or terrorism, the dissemination of plutonium could contaminate the environment and, hence, humans. Human contamination mainly occurs via inhalation and/or wounding (and, less likely, ingestion). In such cases, plutonium, if soluble, reaches circulation, whereas the poorly soluble fraction (such as small colloids) is trapped in alveolar macrophages or remains at the site of wounding. Once in the blood, the plutonium is delivered to the liver and/or to the bone, particularly into its mineral part, mostly composed of hydroxyapatite. Countermeasures against plutonium exist and consist of intravenous injections or inhalation of diethylenetetraminepentaacetate salts. Their effectiveness is, however, mainly confined to the circulating soluble forms of plutonium. Furthermore, the short bioavailability of diethylenetetraminepentaacetate results in its rapid elimination. To overcome these limitations and to provide a complementary approach to this common therapy, we developed polymeric analogs to indirectly target the problematic retention sites. We present herein a first study regarding the decontamination abilities of polyethyleneimine methylcarboxylate (structural diethylenetetraminepentaacetate polymer analog) and polyethyleneimine methylphosphonate (phosphonate polymeric analog) directed against Th(IV), used here as a Pu(IV) surrogate, which was incorporated into hydroxyapatite used as a bone model. Our results suggest that polyethylenimine methylphosphonate could be a good candidate for powerful bone decontamination action.