Transfer RNA Misidentification Scrambles Sense Codon Recoding

Sense codon recoding is the basis for genetic code expansion with more than two different noncanonical amino acids. It requires an unused (or rarely used) codon, and an orthogonal tRNA synthetase:tRNA pair with the complementary anticodon. The Mycoplasma capricolum genome contains just six CGG arginine codons, without a dedicated tRNA^Arg. We wanted to reassign this codon to pyrrolysine by providing M. capricolum with pyrrolysyl‐tRNA synthetase, a synthetic tRNA with a CCG anticodon (${{\rm tRNA}{{{\rm Pyl}\hfill \atop {\rm CCG}\hfill}}}$ ), and the genes for pyrrolysine biosynthesis. Here we show that ${{\rm tRNA}{{{\rm Pyl}\hfill \atop {\rm CCG}\hfill}}}$ is efficiently recognized by the endogenous arginyl‐tRNA synthetase, presumably at the anticodon. Mass spectrometry revealed that in the presence of ${{\rm tRNA}{{{\rm Pyl}\hfill \atop {\rm CCG}\hfill}}}$ , CGG codons are translated as arginine. This result is not unexpected as most tRNA synthetases use the anticodon as a recognition element. The data suggest that tRNA misidentification by endogenous aminoacyl‐tRNA synthetases needs to be overcome for sense codon recoding.     

Resin transfer molding process optimization using numerical simulation and design of experiments approach

The art of resin transfer molding (RTM) process optimization requires a clear understanding of how the process performance is affected by variations in some important process parameters. In this paper, maximum pressure and mold filling time of the RTM process are considered as characteristics of the process performance to evaluate the process design. The five process parameters taken into consideration are flow rate, fiber volume fraction, number of gates, gate location, and number of vents. An integrated methodology was proposed to investigate the effects of process prameters on maximum pressure and mold filling time and to find the optimum processing conditions. The method combines numerical simulation and design of experiments (DOE) approach and is applied to process design for a cylindrical composite part. Using RTM simulation, a series of numerical experiments were conducted to predict maximum pressure and mold filling time of the RTM process. A half‐fractional factorial design was conducted to identify the significant factors in the RTM process. Furthermore, the empirical models and sensitivity coefficients for maximum pressure and mold filling time were developed. Comparatively close agreements were found among the empirical approximations, numerical simulations, and actual experiments. These results were further utilized to find the optimal processing conditions for the example part.     

Development and Evaluation of Biomimetic 3D Coated Composite Scaffold for Application as Skin Substitutes

Skin injuries are an urgent health issue, which raises a great concern in the clinic. Although numerous strategies have been proposed to fabricate skin substitutes for treatment of wounds over the past several decades, fabricating an ideal skin substitute to replace the damaged one can still be a problem. In this study, a novel biomimetic 3D composite skin scaffold is fabricated by combining electrohydrodynamic (EHD) jetting, electrospinning, and coating techniques. Here, the first polycaprolactone (PCL) porous structure is produced by the EHD jetting. Next, the second polylactic acid (PLA) membrane consisted of nanoscale fibers is prepared on the PCL porous structure via the electrospinning. The PCL porous structure and PLA fibers membrane can mimic the dermis and epidermis layer, respectively. Furthermore, gelatin is used as coating solution to enhance the biocompatibility of the scaffold. The structure and morphology of the fabricated scaffolds are analyzed, and the mechanical properties are investigated as well. Moreover, the in vitro and in vivo experiments demonstrate the biocompatibility of the materials and the fabrication process. In conclusion, these results demonstrate that the composite scaffold is effective and holds great potential for skin regeneration in the clinic.     

Parallel-processing applications for data analysis in the social sciences

We examine parallel-processing applications to the analysis of large data sets typically used in social science research. Our research uses a parallel environment which makes it possible to have 1024 processors working simultaneously on a problem. The application is tested using various configurations of number of processors and block-size of data reads on the estimation of a linear model of earnings for the California portion of the 15% sample of the 1970 Census. Performance factors assessed include total execution time, speed-up and efficiency. Execution times are also compared with reference to execution times on an IBM 3081 using SPSS-X. Results indicate that optimal configurations of number of processors and data block-size can produce significantly faster execution times for linear model estimation on relatively large (80,000 cases) data sets. We also discuss other applications of parallel processing to statistical analyses commonly found in social science.     

Dissolution of uranium metal without hydride formation or hydrogen gas generation

This study shows that metallic uranium will cleanly dissolve in carbonate-peroxide solution without generation of hydrogen gas or uranium hydride. Metallic uranium shot, 0.5–1 mm diameter, was reacted with ammonium carbonate–hydrogen peroxide solutions ranging in concentration from 0.13 M to 1.0 M carbonate and 0.50 M to 2.0 M peroxide. The dissolution rate was calculated from the reduction in bead mass, and independently by uranium analysis of the solution. The calculated dissolution rate ranged from about 4 × 10⁻³ to 8 × 10⁻³ mm/h, dependent primarily on the peroxide concentration. Hydrogen analysis of the etched beads showed that no detectable hydrogen was introduced into the uranium metal by the etching process.     

Magnetization transfer for the assessment of bowel fibrosis in patients with Crohn’s disease: initial experience

Object

To assess the feasibility of magnetization transfer (MT) imaging of the bowel wall in patients with Crohn’s disease (CD), and to evaluate its utility for the detection of intestinal fibrosis.

Materials and methods

In this prospective study, 31 patients (age 39.0 ± 13.2 years) with CD were examined in a 1.5T MR scanner. To establish a standard of reference, two independent readers classified the patients in different disease states using standard MR enterography, available clinical data and histological findings. In addition to the standard protocol, a 2D gradient-echo sequence (TR/TE 32 ms/2.17 ms; flip angle 25°) with/without 1,100 Hz off-resonance prepulse was applied. MT ratios (MTR) of the small bowel wall were computed off-line on a pixel-by-pixel basis.

Results

The MT sequences acquired images of sufficient quality and spatial resolution for the evaluation of the small bowel wall without detrimental motion artefacts. In normal bowel wall segments, an intermediate MTR of 25.4 ± 3.4 % was measured. The MTR was significantly increased in bowel wall segments with fibrotic scarring (35.3 ± 4.0 %, p < 0.0001). In segments with acute inflammation, the mean MTR was slightly smaller (22.9 ± 2.2 %).

Conclusion

MT imaging of the small bowel wall is feasible in humans with sufficient image quality and may help with the identification of fibrotic scarring in patients with CD.     

Synthesis and processing of PMMA carbon nanotube nanocomposite foams

Poly(methyl methacrylate) (PMMA) multi-walled carbon nanotubes (MWCNTs) nanocomposites were synthesized by several methods using both pristine and surface functionalized carbon nanotubes (CNTs). Fourier transform infrared (FTIR) spectroscopy was used to characterize the presence and types of functional groups in functionalized MWCNTs, while the dispersion of MWCNTs in PMMA was characterized using scanning electron microscopy (SEM). The prepared nanocomposites were foamed using carbon dioxide (CO₂) as the foaming agent. The cell morphology was observed by SEM, and the cell size and cell density were calculated via image analysis. It was found that both the synthesis methods and CNTs surface functionalization affect the MWCNTs dispersion in the polymer matrix, which in turn profoundly influences the cell nucleation mechanism and cell morphology. The MWCNTs are efficient heterogeneous nucleation agents leading to increased cell density at low particle concentrations. A mixed mode of nucleation mechanism was observed in nanocomposite foams in which polymer rich and particle rich region co-exist due to insufficient particle dispersion. This leads to a bimodal cell size distribution. Uniform dispersion of MWCNTs can be achieved via synergistic combination of improving synthesis methodology and CNTs surface functionalization. Foams from these nanocomposites exhibit single modal cell size distribution and remarkably increased cell density and reduced cell size. An increase in cell density of ∼70 times and reduction of cell size of ∼80% was observed in nanocomposite foam with 1% MWCNTs.     

Charge-induced asymmetrical displacement of an aligned carbon nanotube buckypaper actuator

Randomly dispersed carbon nanotube buckypaper (BP) actuation in open air, ambient conditions was shown to correlates well with the carbon-carbon bond length changes due to charge and discharge. The displacement of magnetically aligned BP actuators applied with a positive voltage was 450% higher than that for an applied negative voltage, which verifies the asymmetrical deformation characteristics of nanotube actuation. Charge-injected actuation of aligned BP can produce a 0.22% strain by applying a high voltage (1100 V). The aligned BP actuators exhibited a higher strain than did randomly dispersed BP actuators. The aligned BP actuators showed stable and fast responses under ambient, open air conditions without electrolytes, which offers direct experimental verification that BP actuation comes directly from carbon-carbon bond deformation due to charge and discharge processes. The nanotube BP actuators demonstrated a much faster response compared to other polymer-based actuators.