Rapid identification of protein phosphatase 1-binding proteins by mixed peptide sequencing and data base searching. Characterization of a novel holoenzymic form of protein phosphatase 1

Microcystin-affinity chromatography was used to purify 15 protein phosphatase 1 (PP1)-binding proteins from the myofibrillar fraction of rabbit skeletal muscle. To reduce the time and amount of material required to identify these proteins, proteome analysis by mixed peptide sequencing was developed. Proteins are resolved by SDS-polyacrylamide gel electrophoresis, electroblotted to polyvinylidene fluoride membrane, and stained. Bands are sliced from the membrane, cleaved briefly with CnBr, and applied without further purification to an automated Edman sequencer. The mixed peptide sequences generated are sorted and matched against the GenBank using two new programs, FASTF and TFASTF. This technology offers a simple alternative to mass spectrometry for the subpicomolar identification of proteins in polyacrylamide gels. Using this technology, all 15 proteins recovered in PP-1C affinity chromatography were sequenced. One of the proteins, PP-1bp55, was homologous to human myosin phosphatase, MYPT2. A second, PP-1bp80, identified in the EST data bases, contained a putative PP-1C binding site and a nucleotide binding motif. Further affinity purification over ATP-Sepharose isolated PP-1bp80 in a quaternary complex with PP-1C and two other proteins, PP-1bp29 and human p20. Recombinant PP-1bp80 also bound PP-1C and suppressed its activity toward a variety of substrates, suggesting that the protein is a novel regulatory subunit of PP-1.     

Molecular recognition with C-clamp porphyrins: synthesis, structural, and complexation studies

The cholesterolaemic effect of 2 hypercholesterolaemic diets was tested in 12 rat inbred strains. Diet I is a commercial diet supplemented with 2.0% (w/w) cholesterol and 5.0% (w/w) olive oil; diet II is identical to diet I with addition of 0.5% (w/w) sodium cholate. Strains with the highest plasma cholesterol response after diet I (BN and LEW) also had the highest cholesterol response after diet II (hyperresponders, mean response > 3.5 mmol/l). In the strains DA, SHR, BC, WAG, LOU, PVG and BUF the strain mean cholesterol response remained below 1.3 mmol/l after both diets (hyporesponders). Strains F344 and OM had an intermediate cholesterol response after both diets (normoresponders, mean response between 1.3 and 3.5 mmol/l). Only in the strains LOU, PVG and SHR there appeared to be a significant higher cholesterol response after diet II when compared with the cholesterol response after diet I. In the strain WKY this difference was of a borderline significance (P = 0.052) and this strain turned from a normoresponder after diet I into a hyperresponder after diet II. Liver cholesterol levels as measured after feeding diet II for two weeks also appeared to be strain-specific. No correlation was found between the plasma cholesterol response after diet II and the liver cholesterol levels. Changes in plasma phospholipid and triglyceride levels have been measured for both diet I and diet II. For group means a correlation between the cholesterol response and the change in phospholipid levels was found (r = 0.86 for diet I, P < 0.001 and r = 0.76 for diet II, P < 0.01). No such correlation was found for triglyceride levels.     

An efficient heuristic for scheduling batches of parts in a flexible flow system

Flexible manufacturing systems (FMSs) are a class of automated systems that can be used to improve productivity in batch manufacturing. Four stages of decision making have been defined for an FMS—the design, planning, scheduling, and control stages. This research focuses on the planning stage, and specifically in the area of scheduling batches of parts through the system.The literature to date on the FMS planning stage has mostly focused on the machine grouping, tool loading, and parttype selection problems. Our research carries the literature a step further by addressing the problem of scheduling batches of parts. Due to the use of serial-access material-handling systems in many FMSs, the batch-scheduling problem is modeled for a flexible flow system (FFS). This model explicitly accounts for setup times between batches that are dependent on their processing sequence.A heuristic procedure is developed for this batch-scheduling problem—the Maximum Savings (MS) heuristic. The MS heuristic is based upon the savings in time associated with a particular sequence and selecting the one with the maximum savings. It uses a two-phase method, with the savings being calculated in phase I, while a branch-and-bound procedure is employed to seek the best heuristic solution in phase II. Extensive computational results are provided for a wide variety of problems. The results show that the MS heuristic provides good-quality solutions.     

A rule-based fuzzy-logic approach for the measurement of manufacturing flexibility

Manufacturing flexibility is a difficult to quantify concept that defies universal definition. This paper presents a novel fuzzy-logic approach for measuring manufacturing flexibility that exploits linguistic variables for quantifying pertinent factors affecting commonly utilized flexibility types. Towards this end, we identify and measure the contribution of specified state variables towards the assumed flexibility types in order to compute an overall flexibility index for a generic manufacturing system. The suggested framework provides a convenient end user approach amenable to software implementation that is exemplified through the development of a prototypical software tool called “Flexibility Evaluator”.     

A Finite Element Computational Method for Gas Hydrate. Part I: Theory

A finite element scheme is presented to model the dissociation of gas hydrates in porous media by hot water injection. We show a complete derivation of the finite element formulation, including the associated mass and energy conservation equations capable of performing transient analysis of both conductive and convective heat transfer for gas and liquid flow in porous media. The scheme also includes the latent heat effect to accommodate the change of phase due to melting of hydrate. In the companion paper, Part II, this method is successfully applied to hydrate reservoirs.     

Exploiting information theory for adaptive mobility and resource management in future cellular networks

We utilize tools from information theory to develop adaptive algorithms for two key problems in cellular networks: location tracking and resource management. The use of information theory is motivated by the fundamental observation that overheads in many aspects of mobile computing can be traced to the randomness or uncertainty in an individual user's movement behavior. We present a model-independent information-theoretic approach for estimating and managing this uncertainty, and relate it to the entropy or information content of the user's movement process. Information-theoretic mobility management algorithms are very simple, yet reduce overhead by /spl sim/80 percent in simulated scenarios by optimally adapting to each individual's movement. These algorithms also allow for flexible tradeoff between location update and paging costs. Simulation results demonstrate how an information-theory-motivated resource provisioning strategy can meet QoS bounds with very small wastage of resources, thus dramatically reducing the overall blocking rate.     

Protective effects of green tea extracts (polyphenon E and EGCG) on human cervical lesions

We investigated clinical efficacy of green tea extracts (polyphenon E; poly E and (-)-epigallocatechin-3-gallate [EGCG]) delivered in a form of ointment or capsule in patients with human papilloma virus (HPV) infected cervical lesions. Fifty-one patients with cervical lesions (chronic cervicitis, mild dysplasia, moderate dysplasia and severe dysplasia) were divided into four groups, as compared with 39 untreated patients as a control. Poly E ointment was applied locally to 27 patients twice a week. For oral delivery, a 200 mg of poly E or EGCG capsule was taken orally every day for eight to 12 weeks. In the study, 20 out of 27 patients (74%) under poly E ointment therapy showed a response. Six out of eight patients under poly E ointment plus poly E capsule therapy (75%) showed a response, and three out of six patients (50%) under poly E capsule therapy showed a response. Six out of 10 patients (60%) under EGCG capsule therapy showed a response. Overall, a 69% response rate (35/51) was noted for treatment with green tea extracts, as compared with a 10% response rate (4/39) in untreated controls (P<0.05). Thus, the data collected here demonstrated that green tea extracts in a form of ointment and capsule are effective for treating cervical lesions, suggesting that green tea extracts can be a potential therapy regimen for patients with HPV infected cervical lesions.     

Detection and analysis of transition from annular to intermittent flow in vertical tubes

In vertical co-current gas-liquid flow, the transition from annular to intermittent flow occurs when gas core becomes interrupted by liquid bridges due to the instability of the interfacial capillary waves. An analytical model is formulated to explain the liquid bridging in terms of the growth of finite amplitude interfacial capillary waves. Experimental results show that the longest wave length, which is associated with the transition, is about eight times the wave length of waves moving with the velocity of the liquid film.     

Periodic discrete-time systems: stability analysis and robustcontrol using zero placement

A simple method (based on Floquet theory) for obtaining the characteristic equation (and hence stability) of periodic discrete-time systems is presented. Using this method it is shown that 2-periodic controllers can be used to relocate the zeros of SISO plants. Some examples are considered to illustrate the use of 2-periodic controllers for robust control of finite gain margin problems