Rapid Detection of Wheat Blast Pathogen Magnaporthe oryzae Triticum Pathotype Using Genome-Specific Primers and Cas12a-mediated Technology

Wheat blast, caused by the fungus Magnaporthe oryzae Triticum (MoT) pathotype, is a devastating disease persistent in South America and Bangladesh. Since MoT generally fails to cause visual symptoms in wheat until the heading stage when the infection would have advanced, disease control by fungicide application solely based on the detection of visual symptoms is ineffective. To develop an accurate and sensitive method to detect MoT at the seedling and vegetative stages for disease control, we sequenced the genomes of two MoT isolates from Brazil and identified two DNA fragments, MoT-6098 and MoT-6099, that are present in the MoT genome but not in the genome of the rice-infecting Magnaporthe oryzae Oryzae (MoO) pathotype. Using polymerase chain reaction (PCR), we confirmed the specificity of the two markers in 53 MoT and MoO isolates from South America and Bangladesh. To test the efficiency of the two markers, we first established a loop-mediated isothermal amplification (LAMP) method to detect MoT at isothermal conditions, without the use of a PCR machine. Following this, we used the Cas12a protein and guide RNAs (gRNAs) to target the MoT-6098 and MoT-6099 sequences. The activated Cas12a showed indiscriminate single-stranded deoxyribonuclease (ssDNase) activity. We then combined target-dependent Cas12a ssDNase activation with recombinase polymerase amplification (RPA) and nucleic acid lateral flow immunoassay (NALFIA) to develop a method that accurately, sensitively, and cost-effectively detects MoT-specific DNA sequences in infected wheat plants. This novel technique can be easily adapted for the rapid detection of wheat blast and other important plant diseases in the field.     

Aggregate nonparametric safety analysis of traffic zones

Exploring the significant variables related to specific types of crashes is vitally important in the planning stage of a transportation network. This paper aims to identify and examine important variables associated with total crashes and severe crashes per traffic analysis zone (TAZ) in four counties of the state of Florida by applying nonparametric statistical techniques such as data mining and random forest. The intention of investigating these factors in such aggregate level analysis is to incorporate proactive safety measures in transportation planning. Total and severe crashes per TAZ were modeled to provide predictive decision trees. The variables which carried higher weight of importance for total crashes per TAZ were – total number of intersections per TAZ, airport trip productions, light truck productions, and total roadway segment length with 35 mph posted speed limit. The other significant variables identified for total crashes were total roadway length with 15 mph posted speed limit, total roadway length with 65 mph posted speed limit, and non-home based work productions. For severe crashes, total number of intersections per TAZ, light truck productions, total roadway length with 35 mph posted speed limit, and total roadway length with 65 mph posted speed limit were among the significant variables. These variables were further verified and supported by the random forest results.     

High dielectric permittivity and percolative behavior of polyvinyl alcohol/potassium dihydrogen phosphate composites

A new kind of anhydrous, transparent, and flexible potassium dihydrogen phosphate (KH₂PO₄ or KDP)/polyvinyl alcohol (PVA) composite in the form of film (0.10 mm) has been prepared by solution casting technique. KDP is well dispersed in the polymer matrix as observed from the microstructural studies. Frequency and temperature dependent dielectric properties of the composites have been studied with varying KDP concentrations. The PVA/KDP composite films exhibited extraordinarily high relative permittivity ε′ ∼ 430 (80 times higher compared with pure PVA and even higher than KDP) near the percolation threshold (ϕ_C = 2.5 wt % KDP) with low dielectric losses (∼ 0.15) at 1 kHz and room temperature. Such flexible, low loss and high dielectric permittivity material has enormous importance for application in devices. © 2012 Wiley Periodicals, Inc. J Appl Polym Sci, 2012     

Improved quadtree image segmentation approach to region information

Images are full of information and most often, little information is desired for subsequent processing. Hence, region of interest has key importance in image processing. Quadtree image segmentation has been widely used in many image processing applications to locate the region of interest for further processing. There are also variable block-size image coding techniques to effectively reduce the number of transmitted parts. This paper presents quadtree partition technique as a pre-processing step in image processing to determine what part should be more heterogeneous than the others. It also introduces an idea to solve the problem of squared images. Finally, proposed approach is implemented and analysed. The simulation of the Matlab code of the quadtree is represented by all algorithms and the figures. Thus, achieved results are promising in the state of the art.     

Assessment of organic acid-rich bio-sap to generate electricity

The study has focused on electricity generation from organic acid-rich bio-substrate like star fruit (Averrhoa carambola). The sap of star fruit was selected as an electrolyte due to the presence of significant amounts of organic acids such as citric acid and ascorbic acid. To preserve the sap, 2% phenol by volume was used to reduce the growth of microorganisms, and the addition of phenol did not affect the initial pH. It was observed that due to an increase in the electrode surface area, reaction rate and current generation had been amplified. Internal resistance also decreased rapidly because of the large electrode surface area. Furthermore, internal resistance was the significant barrier in electricity generation, which was also successfully controlled by the baffle flow agitation system. Moreover, the baffle flow agitation system reduces the formation of dead zones and increases the total dissolved solids inside the electrochemical cell compartments during operation.     

3D numerical investigation of ZnO/Zn hydrolysis for hydrogen production

The current research is focused on the hydrogen production through a two‐step ZnO/Zn thermochemical water splitting cycle. In the present paper, numerical modeling of the second step is conducted using Computational Fluid Dynamics (CFD)2, where steam reacts with zinc to produce hydrogen. The parametric study shows that the hydrogen yield is relatively insensitive to the steam/zinc molar ratio and inversely proportional to the argon/steam molar ratio. For large argon to steam molar ratios, hydrogen yield is relatively insensitive to the inlet temperature of zinc and steam, and increases marginally with an increase in the argon inlet temperature. Five different reactor configurations were evaluated comprehensively. Among all configurations, a cylindrical reactor with a tangential inlet for argon and zinc, and a radial inlet for steam (both in the bottom plane of the reactor) and a tangential outlet in the top plane of the reactor produced the highest hydrogen yield of 88%. Copyright © 2013 John Wiley & Sons, Ltd.     

Effects of plasma parameters on increasing the purity of nitrogen atom encapsulated fullerene in an RF plasma

Relatively high purity of nitrogen atom encapsulated fullerene (N@C₆₀) has been synthesized by an electron beam superimposed radio frequency (RF) discharge plasma method. Nitrogen species are characterized by an optical emission spectroscopy (OES); and a relationship between optical emission spectra and the purity of N@C₆₀ has been examined. It is observed that the increased amount of nitrogen molecule ions impinging on the sublimated fullerenes enhance the synthesis of N@C₆₀. Here, it is cleared that the efficient synthesis of N@C₆₀ is possible by controlling the parameters of electron beam superimposed RF plasma. As a consequence, comparatively high purity of about 0.08% of N@C₆₀ has been obtained.