Degradation of cyanuric acid in soil by Pseudomonas sp. NRRL B-12227 using bioremediation with self-immobilization system

The rates of degradation of cyanuric acid, a key intermediate in a metabolic pathway of s-triazine herbicides, were measured for Pseudomonas sp. NRRL B-12227. The rate of degradation was affected by the rate of cyanuric acid transport through cell membranes and the activity of cyanuric acid amidohydrolase inside the cells. At low concentrations of cyanuric acid, the acclimation of cells to cyanuric acid and/or added nutrients effectively enhanced the degradation rate. The strain was also applied to bioremediation using a Bioremediation with Self-Immobilization System (BSIS), in which Pseudomonas sp. NRRL B-12227 cells were co-immobilized with Bacillus subtilis, the latter of which secretes a viscous polymer, in a shallow layer of soil packed in a column. More than 70% of the Pseudomonas sp. NRRL B-12227 cells were co-immobilized with the B. subtilis in a 7.5 cm layer of the packed soil by self-aggregation. More than 60% of the 1 mM cyanuric acid supplied to the packed soil was degraded in this layer during a 72 h period.     

Lipid characteristics of two subtropical Seriola fishes, Seriola dumerili and Seriola rivoliana, with differences between cultured and wild varieties

The lipid and fatty acid compositions of the muscle and liver of two subtropical Seriola fish species, Seriola dumerili and Seriola rivoliana, were investigated. The lipid levels of cultured S. dumerili were significantly higher than were those of the wild ones. Triacylglycerols and phospholipids were the dominant lipids of both the cultured and wild. In both species, the major fatty acids in the muscle and liver triacylglycerols were 14:0 (cultured), 16:0, 18:0, 16:1n-7, 18:1n-7, 18:1n-9, 18:2n-6 (linoleic acid: LA, cultured), 20:5n-3, and 22:6n-3. In spite of similar levels of many of the fatty acids between cultured and wild triacylglycerols, the cultured samples had markedly higher levels of LA with trace levels of 20:4n-6 (arachidonic acid: ARA) and 22:5n-6, while the wild ones had very low 18:2n-6 levels with small levels of ARA and 22:5n-6. The ratio (R(LA/ARA)) of LA to ARA in the cultured samples was markedly higher than were those of the wild samples.     

Comparative analysis of starch properties of different root and tuber crops of Sri Lanka

The physicochemical properties of starches of six different root and tuber crop species grown mainly in Sri Lanka showed significant differences among the tested crop species and varieties. The median granule size of starch of tested root and tuber crop species varied from 33.5 to 10.2 μm. The largest granule size and the highest blue value were given by the canna, Buthsarana, and yam species, in that order. The amylose content of cassava was higher than those of sweet potato and many yams. High peak viscosities, high breakdown, and high final viscosities were observed in yams, and, generally, such starch showed a high swelling power. According to the correlation analysis, these pasting properties would mainly be due to their larger starch granule size. Based on the thermal properties, cassava starch showed less energy requirement for gelatinization and thus gelatinized at lower temperatures. Furthermore, a higher susceptibility of raw cassava starch toward fungal glucoamylase was observed. The low enzyme digestibility of raw yam starch would be due to its large granules. Correlation analysis showed that the blue value and starch granule size were important in determining the pasting, thermal, and other properties of starch.     

Analogy Between Mechanical and Dielectric Strength Distributions for BaTiO3 Ceramics

Mechanical and dielectric strengths were measured for BaTiO₃, ceramics at room temperature. The results were evaluated in terms of Weibull statistics, and a clear analogy between the mechanical and dielectric strength distributions was found.     

Improved polyhydroxybutyrate (PHB) production in transgenic tobacco by enhancing translation efficiency of bacterial PHB biosynthetic genes

Polyhydroxybutyrate [P(3HB)] was produced in the transgenic tobacco harboring the genes encoding acetoacetyl-CoA reductase (PhaB) and polyhydroxyalkanoate synthase (PhaC) from Ralstonia eutropha (Cupriavidus necator) with optimized codon usage for expression in tobacco. P(3HB) contents in the transformants (0.2mg/g dry cell weight in average) harboring the codon-optimized phaB gene was twofold higher than the control transformants harboring the wild-type phaB gene. The immunodetection revealed an increased production of PhaB in leaves, indicating that the enhanced expression of PhaB was effective to increase P(3HB) production in tobacco. In contrast, codon-optimization of the phaC gene exhibited no apparent effect on P(3HB) production. This result suggests that the efficiency of PhaB-catalyzed reaction contributed to the flux toward P(3HB) biosynthesis in tobacco leaves.     

Reactive processing of thermoset/thermoplastic blends: A potential for injection molding

Poly(2,6-dimethyl-1,4-phenylene ether) (PPE) is an engineering plastic with high heat distortion temperature. Melt processing of neat PPE is usually accompanied with thermal degradation. The degradation problem is solved by blending with polystyrene to reduce the processing temperature. We propose an alternative using triallylisocyanurate (TAIC). TAIC is a low viscosity liquid that can be cured by peroxide, e.g. α,α′-bis(t-butylperoxy-m-isopropyl)benzene (PBP), to provide a thermoset. The PPE/TAIC mixture was shown to have the upper critical solution temperature (UCST) type phase behavior. At the single-phase regime above UCST and below the cure temperature (∼180°C for PBP), the mixture had a low viscosity, less viscous than a conventional thermoplastic such as PC and PP. That is, a nice window for injection molding was available, e.g., at 100°C to 160°C for a 50/50 blend. After injecting into a hot mold set at cure temperature, the blend cured in a short time (∼80% conversion in 5 min). Then the molded and partly cured material kept its shape and dimensions during post-cure in a hot chamber at higher temperature (e.g. 250°C). Using transmission electron microscopy and dynamic mechanical analyses, it was shown that the cured blend had a bicontinuous two-phase structure with periodic spacings of ∼30 nm, suggesting a structure formation via a spinodal decomposition driven by the increase in molecular weight of TAIC during cure. The cured material showed excellent flexural strength and high chemical resistance.     

Oncogenic Mutation BRAF V600E Changes Phenotypic Behavior of THLE-2 Liver Cells through Alteration of Gene Expression

The accumulation of mutations in cancer driver genes, such as tumor suppressors or proto-oncogenes, affects cellular homeostasis. Disturbances in the mechanism controlling proliferation cause significant augmentation of cell growth and division due to the loss of sensitivity to the regulatory signals. Nowadays, an increasing number of cases of liver cancer are observed worldwide. Data provided by the International Cancer Genome Consortium (ICGC) have indicated many alterations within gene sequences, whose roles in tumor development are not well understood. A comprehensive analysis of liver cancer (virus-associated hepatocellular carcinoma) samples has identified new and rare mutations in B-Raf proto-oncogene (BRAF) in Japanese HCC patients, as well as BRAF V600E mutations in French HCC patients. However, their function in liver cancer has never been investigated. Here, using functional analysis and next generation sequencing, we demonstrate the tumorigenic effect of BRAF V600E on hepatocytes (THLE-2 cell line). Moreover, we identified genes such as BMP6, CXCL11, IL1B, TBX21, RSAD2, MMP10, and SERPIND1, which are possibly regulated by the BRAF V600E-mediated, mitogen-activated protein kinases/extracellular signal-regulated kinases (MAPK/ERK) signaling pathway. Through several functional assays, we demonstrate that BRAF L537M, D594A, and E648G mutations alone are not pathogenic in liver cancer. The investigation of genome mutations and the determination of their impact on cellular processes and functions is crucial to unraveling the molecular mechanisms of liver cancer development.     

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans

Lectins, carbohydrate-binding proteins, are attractive biomolecules for medical and biotechnological applications. Many lectins have multiple carbohydrate recognition domains (CRDs) and strongly bind to specific glycans through multivalent binding effect. In our previous study, protein nano-building blocks (PN-blocks) were developed to construct self-assembling supramolecular nanostructures by linking two oligomeric proteins. A PN-block, WA20-foldon, constructed by fusing a dimeric four-helix bundle de novo protein WA20 to a trimeric foldon domain of T4 phage fibritin, self-assembled into several types of polyhedral nanoarchitectures in multiples of 6-mer. Another PN-block, the extender PN-block (ePN-block), constructed by tandemly joining two copies of WA20, self-assembled into cyclized and extended chain-type nanostructures. This study developed novel functional protein nano-building blocks (lectin nano-blocks) by fusing WA20 to a dimeric lectin, Agrocybe cylindracea galectin (ACG). The lectin nano-blocks self-assembled into various oligomers in multiples of 2-mer (dimer, tetramer, hexamer, octamer, etc.). The mass fractions of each oligomer were changed by the length of the linkers between WA20 and ACG. The binding avidity of the lectin nano-block oligomers to glycans was significantly increased through multivalent effects compared with that of the original ACG dimer. Lectin nano-blocks with high avidity will be useful for various applications, such as specific cell labeling.