MOSBY: a molecular structure viewer program with portability and extensibility

A molecular structure viewer program, MOSBY has been developed for studies that use atomic coordinates to understand the structures of protein molecules. The program is designed to be portable with a comprehensive user interface by our high-throughput graphics library. In addition, it cooperates with extension modules customized for individual research topics and analysis. For example, an electron density module loads and displays electron density maps derived in X-ray crystallographic analysis superimposed to an atomic model. A molecular dynamics module reads a trajectory file of the results of molecular dynamics calculations and animates the structure. These plug-in modules are devised to function without modification to the MOSBY program. For variations of analysis and calculations with atomic coordinates, the portability and extensibility illustrated by MOSBY play an important rule in scientific computational tools with active software development.     

An investigation of the pH-activity relationships of Cex, a family 10 xylanase from Cellulomonas fimi: xylan inhibition and the influence of nitro-substituted aryl-beta-D-xylobiosides on xylanase activity

The kinetic parameters of Cex, a family 10 xylanase from Cellulomonas fimi, were determined at various pH levels using soluble birchwood xylan (BWX) as a natural polymeric substrate along with three other synthetic aryl-beta-D-xylobioside substrates. Using BWX, a high level of substrate inhibition was observed which increased with decreasing pH. In contrast, typical Michaelis-Menten-type profiles were obtained using the three aryl-beta-D-xylobiosides as substrates. The k(cat) values determined using o-nitrophenyl-beta-D-xylobioside did not change as the pH increased, whereas the k(cat) values obtained with BWX, phenyl-beta-D-xylobioside and p-nitrophenyl-beta-D-xylobioside decreased, suggesting that the presence of an ortho nitro group affects the activity displayed by Cex. These differences were not observed with XynB from Clostridium stercorarium F9, a member of the same family of xylanases as Cex. These results indicate that a careful evaluation is required when employing substituted aryl-beta-D-xylobiosides in the characterization of xylanases.     

紫外线杀菌的原理和最新应用

1紫外线杀菌的原理介绍 1.1紫外线杀菌原理 紫外线用于消毒、杀菌已经很多年了,细菌的细胞中含有细菌的遗传信息核酸DNA和RNA,当核酸被紫外线照射时会大量地吸收紫外光,从而就会在体内形成一部分的间二氮杂苯(主要构成为蛋白酶)和间二氮杂苯的异构体.这种物质会使细菌自身的新陈代谢机能出现障碍,并且会导致细菌的遗传性出现问题,而持续的紫外线照射,最后就会导致因为上述原因所造成的细菌群体的死亡.此外,紫外光除了杀菌的用途外,也可用于让微生物降低自身的"活动性",有些细菌在可见光的照射下是比较活跃的,我们称之为"光恢复"特性,也就是说,在波长为300～500nm的可见光下,细菌自身有一种光恢复酶素会让细菌种群变得很活跃,自身会大量繁殖.所以,当需要控制这种细菌的数量及种群时,则可以考虑用微弱的紫外线进行照射,将细菌的数量控制在一定范围之内.     

Intra-body data transmission for the personal area network

Intra-body communication is a wireless means of exchanging information within a personal area network (PAN) between wearable electronic sensors and devices. The feasibility of intra-body communication is confirmed through several experiments on signal propagation within the human body, and a human phantom is designed and used to obtain reproducible results over repeated experiments. Based on the results of these experiments, a prototype transmission system is constructed using aluminum electrodes powered by 3 V DC and operating in the 10.7 MHz frequency modulation (FM) band. This prototype is demonstrated to be capable of transmitting analog signals through the human subjects in the presence of external noise. Digital data transmission at 9600 bps is also achieved using newly fabricated 10.7 MHz frequency shift keying (FSK) transmitter and receiver devices. The carrier frequency of 10.7 MHz is the intermediate frequency of FM radio receivers, meaning that the proposed system can make use of a wide selection of inexpensive, commercial radio frequency devices.     

Address‐While‐Display technique combined with gas‐discharge AND logic for driving AC‐PDPs

A hybrid AWD/AND drive technique has been developed in which an Address‐While‐Display (AWD) scheme is combined with an AND logic characteristic that gas discharges demonstrate. The AWD technique enables AC‐PDPs to be driven at high luminance, while the AND logic reduces the number of scan drivers by an order of magnitude. A detailed analysis of the addressing operation has been made. The hybrid drive utilizes the AND logic in two ways: (1) a combination of two voltage pulses and (2) a combination of a voltage pulse and discharge‐priming particles. It was found that the addressing operation requires the establishment of a discharge between the scan and data electrodes, and also between the scan and display electrodes.     

Preparation of BaTiO3 ultrafine particles by micro-emulsion charring method

Ultrafine BaTiO₃ particles were prepared by a micro-emulsion charring (MEC) method. The MEC method consisted of two steps. The first step is the preparation of a water/oil micro-emulsion with BaTiO₃ elements, and the second is a low temperature firing process in N₂ atmosphere, which includes charring of oil in an emulsion and powdering BaTiO₃ particles with the char. The char formed around BaTiO₃ particles prevents an agglomeration of BaTiO₃ particles during firing. In the present experiment, the W/O ratio and the amount of emulsifier greatly influenced the size of droplets of the emulsion. The charring temperature was another important experimental factor in order to obtain the desired BaTiO₃ particles. The finally obtained BaTiO₃ charring powders were monodispersed spherical particles and the particle size was 0.1 m to 0.5 m.     

Processing and Thermal Conductivity of Sintered Reaction-Bonded Silicon Nitride. I: Effect of Si Powder Characteristics

This paper will present sintered reaction-bonded silicon nitride (SRBSN) material with a high thermal conductivity of 121 W·(m·K)⁻¹, which has been successfully prepared from a coarse Si powder with lower levels of oxygen and aluminum impurities, using a mixture of Y₂O₃ and MgSiN₂ as sintering additives, by nitriding at 1400°C for 8 h and subsequent post-sintering at 1900°C for 12 h at a nitrogen pressure of 1 MPa N₂. This thermal conductivity value is higher than that of the materials prepared from high-purity α-Si₃N₄ powder (UBE SN-E10) with the same additive composition under the same sintering conditions. In order to study the effects of Si powder characteristics on the processing, microstructure, and thermal conductivity of SRBSN, the other type of fine powder with higher native oxygen and metallic impurity (typically Al and Fe) contents was also used. The effects of Si particle size, native oxygen, and metallic impurities on the nitriding process, post-sintering process, and thermal conductivity of the resultant SRBSN materials were discussed in detail. This work demonstrates that the improvement in thermal conductivity of SRBSN could be achieved by using higher purity coarse Si powder with lower levels of oxygen and aluminum impurities. In addition, this work also shows that the nitriding temperature has no significant effect on the microstructure and thermal conductivity of SRBSN during post-sintering, although it does affect the characteristics of RBSN formed during nitridation.     

Fatal interstitial pulmonary disease in a patient with dyskeratosis congenita after allogeneic bone marrow transplantation

Local control rate by radical radiation therapy was analyzed in 33 patients with a piriform sinus cancer. Twenty-five patients (76%) were in stage T3 + T4. Local recurrence-free survival at 3 years was 49% in T1 + T2 and 25% in T3 + T4 (p = 0.01). In T1 + T2 lesions, a biologically effective dose for an acute reaction over 80 Gy and total treatment time less than 70 days appeared to improve local control. In T3 + T4 lesions, good radiation response assessed by the regaining of laryngeal mobility affected local control favorably. An esophageal involvement and destruction of the laryngeal cartilage as well as soft tissue extension precluded the possibility of local control by radiation therapy alone. In addition to the T-stage, other tumor factors should also be considered for predicting local control with radiation therapy.