Generalized Needleman–Wunsch algorithm for the recognition of T-cell epitopes

In this paper, we propose a new encoding technique that combines the different physicochemical properties of amino acids together with Needleman–Wunsch algorithm. The algorithm was tested in the recognition of T-cell epitopes. A series of SVM classifiers, where each SVM is trained using a different physicochemical property, combined with the “max rule” enables us to obtain an improvement over the state-of-the-art approaches.     

Investigating the Role of Conformational Effects on Laccase Stability and Hyperactivation under Stress Conditions

Fungal laccase from Steccherinum ochraceum 1833 displays remarkable stability under different harsh conditions: organic/buffer mixtures, thermal treatment, and microwave radiation. The behavior is particularly significant in the light of the sharp inactivation observed for two different fungal laccases. Laccase from S. ochraceum 1833 also displays hyperactivation under mild thermal treatment (60 °C). Molecular dynamics simulations at 80 °C explained how this laccase retains the geometry of the electron transfer pathway, thereby assuring electron transfer through the copper ions and thus maintaining its catalytic activity at high temperature. Spectroscopic studies revealed that the thermal activation corresponds to specific conformational changes in the protein. The results indicate that this laccase is potentially applicable under denaturing conditions that might be beneficial for the biotransformation of recalcitrant substrates.     

Relevant chiroptical and thermal properties in optically active methacrylic copolymers containing carbazole and azoaromatic chromophores in the side-chain

Novel optically active methacrylic copolymers, bearing carbazole and azoaromatic moieties linked to the main chain with a rigid (S)-hydroxysuccinimide residue of one prevailing absolute configuration, have been prepared and characterized with the aim to establish the effects of the chiral group and of the dipolar interactions between the two side-chain chromophores on their properties.In particular, the observed chiroptical properties suggest the presence of ordered chiral conformations at least for chain segments of the macromolecules. Spectroscopic, thermal and chiroptical characterizations of these copolymers demonstrate the occurrence of significant electronic interactions between carbazole chromophores and azobenzene moieties. These interactions are related to the unusual partially alternating structure of the investigated copolymers and the relevant chiroptical and thermal properties. In fact, the polymeric derivates show high glass transition temperatures and good thermal stability, thus opening the way to a variety of potential applications based on photoconductive and optoelectronic properties.     

An Integrated CAD Methodology for Yield Enhancement of VLSI CMOS Circuits Including Statistical Device Variations

In this paper a novel CAD methodology for yield enhancement of VLSI CMOS circuits including random device variations is presented. The methodology is based on a preliminary characterization of the technological process by means of specific test chips for accurate mismatch modeling. To this purpose, a very accurate position-dependent parameter mismatch model has been formulated and extracted. Finally a CAD tool implementing this model has been developed. The tool is fully integrated in an environment of existing commercial tools and it has been experimented in the STMicroelectronics Flash Memory CAD Group.As an example of application, a bandgap reference circuit has been considered and the results obtained from simulations have been compared with experimental data. Furthermore, the methodology has been applied to the read path of a complex Flash Memory produced by STMicroelectronics, consisting of about 16,000 MOSFETs. Measurements of electrical performances have confirmed the validity of the methodology, and the accuracy of both the mismatch model and the simulation flow.     

Numerical Analysis on a Latent Thermal Energy Storage System with Phase Change Materials and Aluminum Foam

Abstract

A latent heat thermal energy storage system with phase change material (PCM) is numerically studied. To enhance the heat transfer inside the system, a highly conductive metal foam is employed with ceramic nanoparticles. The latter method of enhancement leads to a new class of material called Nano-PCM. The system under investigation is a 70-L tank filled up with pure PCM or Nano-PCM and several pipes are situated where the heat transfer fluid (HTF) flows. The pipe surfaces are assumed at constant temperature above the PCM melting temperature to simulate the heat transfer from the HTF. The enthalpy-porosity theory is applied to simulate the PCM phase change, while the porous media formulation is assumed to describe the metal foam behavior. The nano-PCM is modeled with single-phase model where the properties are the weighted-average between the fluid base and the nanoparticles. The simulations are accomplished for charging-discharging process at different porosities and nanoparticle concentration. The results are given in term of average melting fraction evolution, average temperature as function of time, average stored energy. The metal foam significantly improves the heat transfer between PCM and HTF respect to the addition of nanoparticles, reducing the charging and discharging time more than one order of magnitude.     

Experimental and Monte Carlo analysis of impact-ionization inAlGaAs/GaAs HBT's

We present a detailed experimental and theoretical investigation of hot electron effects occurring in AlGaAs/GaAs Heterojunction Bipolar Transistors (HBT's) operating at low current densities. Electrons heated by the strong electric field at the base-collector junction give rise to impact ionization and light emission. A new general purpose weighted Monte Carlo procedure has been developed to study such effects. The importance of dead-space effects on the multiplication factor of the device is demonstrated. Good agreement is found between theory and experiment