Improved decoding of LDPC coded modulations

A coded modulation belief propagation (CMBP) decoder is proposed for decoding LDPC codes with multilevel modulations. The decoder takes into account statistical dependencies among bits originating in the same symbol, providing better performance than the marginal BP (MBP) decoder. Asymptotically it converges to MAP decoding. The CMBP decoder is based on a single-level coding (SLC) scheme and does not suffer from practical disadvantages of multi-level coding (MLC) schemes. Furthermore, the CMBP decoder can close the capacity gap of the bit interleaved coded modulation (BICM) SLC scheme. The BICM capacity gap increases when the modulation size increases and in scenarios where gray mapping is not possible.     

A simple scheme for slot reuse without latency for a dual busconfiguration

A simple scheme for slot reuse without latency for the dual bus configuration is studied. The scheme relies on information read in the previous slot and will be referred to as previous slot information (PSI) slot reuse. The scheme requires a minimal addition to the station hardware and its reliability is high. The efficiency of PSI is checked over a wide range of parameters and is found to be almost as good as destination release. The scheme can be implemented with or without the addition of erasure nodes     

Site-directed mutagenesis of Arg60 and Cys271 in ornithine transcarbamylase from rat liver

We have investigated the putative carbamylphosphate- and ornithine-bindingdomains in ornithine transcarbamylase from rat liver using site-directedmutagenesis. Arg60, present in the phosphate-binding motif X-Ser-X-Arg-Xand therefore implicated in the binding of the phosphate moietyof carbamylphosphate has been replaced with a leucine. Thisresults in a dramatic reduction of catalytic activity, althoughthe enzyme is synthesized in cells stably transfected with themutant clone and imported, correctly processed and assembledinto a homotrimer in mitochondria. The sole cysteine residue(Cys271) has been implicated in ornithine binding by the chemicalmodification studies of Marshall and Cohen in 1972 and 1980(J. Biol. Chem., 247, 1654–1668, 1669–1682; 255,7291–7295, 7296–7300). Replacement of this residuewith serine did not eliminate enzyme activity but affected theMichaelis constant for ornithine (K_b, increasing it 5-fold from0.71 to 3.7 mM and reduced the k_cat at pH 8.5 by 20-fold. Thesechanges represent a loss in apparent binding energy for theenzyme - ornithine complex of 2.9 kcal/mol, suggesting thatCys271 is normally involved in hydrogen bonding to the substrate,ornithine. The cysteine to serine substitution also caused thedissociation constant (Kä for the competitive inhibitor,L-norvaline to be increased 10-fold, from 12 to 120 µM.The small loss in binding energy and relatively high residualcatalytic activity of the mutant strongly suggests that a numberof other residues are involved in the binding of ornithine.The effect of replacement of Cys271 with serine was restrictedto the ornithine binding site of the enzyme since both the bindingconstant for carbamyl-phosphate (K_ia) and Michaelis constant(K_a) were not appreciably different for mutant and wild-typeenzymes. The pH optimum of the wild-type enzyme (8.6) is increasedto > 9.6 in the Ser271 mutant.     

Sex role identity in female alcoholism.

Compared 28 alcoholic women with 28 matched controls on a variety of masculinity-femininity measures (e.g., Franck Drawing Completion Test). The alcoholics were expected to earn more masculine scores than the controls on measures which tap relatively unconscious levels of sex role identity. On 2 measures of conscious femininity, the alcoholics were typically feminine. On the 3rd, a measure of attitudes toward motherhood, the alcoholics were more feminine than the controls. On a questionnaire measure of sex role style, the alcoholics gave more assertive, masculine responses than the controls, and the scores for alcoholics on a projective measure of unconscious masculinity-femininity were more masculine than those for the controls. The medical histories of the alcoholics contained a higher incidence of obstetrical and gynecological disorders than did the histories of the controls. The relationship between sex role identity disturbance and the psychological function of alcoholic women's excessive drinking is discussed. (22 ref.) (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

A bacteriophage reagent for Salmonella: molecular studies on Felix 01

Felix 01 (F01) is a bacteriophage originally isolated by Felix and Callow which lyses almost all Salmonella strains and has been widely used as a diagnostic test for this genus. Molecular information about this phage is entirely lacking. In the present study, the DNA of the phage was found to be a double-stranded linear molecule of about 80 kb. 11.5 kb has been sequenced and in this region A + T content is 60%. There are relatively few restriction endonuclease cleavage sites in the native genome and clones show this is due to their absence rather than modification. A restriction map of the genome has been constructed. The ends of the molecule cannot be ligated although they contain 5' phosphates. At least 60% of the genome must encode proteins. In the sequenced portion, many open reading frames exist and these are tightly packed together. These have been examined for homology to published proteins but only 1 to 17 shows similarity to known proteins. F01 is therefore the prototype of a new phage family. On the basis of restriction sites, codon usage and the distribution of nonsense codons in the unused reading frames, a strong case can be made for natural selection that reacts to mRNA structure and function.     

Supplementing fresh pasture with maize,lotus, sulla and pasture silages for dairy cows in summer

A trial was conducted to compare benefits obtained from feeding four types of silage. There were two silages that contained condensed tannins (CT)—lotus (Lotus corniculatus) and sulla (Hedysarum coronarium)—maize silage or traditional ryegrass pasture silage, all fed at 5 kg dry matter (DM) cow^?1 day^?1 with restricted pasture (RP). Cows on the RP (control) treatment and those fed the silage treatments were offered an allowance of 25 kg pasture DM cow^?1 day^?1, while the full pasture (FP) cows were offered 50 kg pasture DM cow^?1 day^?1. Silage supplementation increased both DM intake and milk yield compared with cows given RP only. Cows on the lotus silage supplement and the FP treatment had significantly higher milk production than the other silage supplemented cows (P < 0.001). For cows given lotus silage, the high milk yield was probably due to a combination of the higher nutritive value of the silage and possibly to the protein‐sparing effects of the lotus condensed tannins because the total DM intake of cows fed the lotus silage was the same as that of cows given the pasture and maize silages (P > 0.25). The high milk yield of the FP treatment was mainly a result of the cows having a higher intake of pasture than cows on all the other treatments. This study demonstrated the potential benefit of silage supplementation, particularly with lotus silage, for increased milksolids yield in summer when low pasture growth rates and quality may otherwise limit production. Copyright © 2006 Society of Chemical Industry     

Geochemical cycling of arsenic in a coastal aquifer

Biogeochemically modified pore waters from subterranean estuaries, defined as the mixing zone between freshwater and saltwater in a coastal aquifer, are transported to coastal waters through submarine groundwater discharge (SGD). SGD has been shown to impact coastal and perhaps global trace metal budgets. The focus of this study was to investigate the biogeochemical processes that control arsenic cycling in subterranean estuaries. Total dissolved As, as well as a suite of other trace metals and nutrients, were measured in a series of wells and sediment cores at the head of Waquoit Bay, MA. Dissolved As ranged from below detection to 9.5 microg/kg, and was associated with plumes of dissolved Fe, Mn, and P in the groundwater. Sedimentary As, ranging from 360 to 7500 microg/kg, was highly correlated with sedimentary Fe, Mn, and P. In addition, amorphous Fe (hydr)oxides were more efficient scavengers of dissolved As than the more crystalline forms of solid-phase Fe. Given that dissolved As in the surface bay water was lower than within the subterranean estuary, our results indicate that the distribution and type of Fe and Mn (hydr)oxides in coastal aquifers exert a major influence on the biogeochemical cycling of As in subterranean estuaries and, ultimately, the fate of groundwater-derived As in marine systems influenced by SGD.     

The Effect of Increasing Fruit and Vegetable Consumption on Overall Diet: A Systematic Review and Meta-analysis

Increasing fruit and vegetable (FV) consumption is associated with reduced risk of major diseases. However, it is unclear if health benefits are related to increased micronutrient intake or to improvements in overall diet profile.

This review aimed to assess if increasing FV consumption had an impact on diet profile. In the systematic review, 12 studies revealed increases in micronutrient intakes, whilst the meta-analysis confirmed macronutrient findings from the systematic review showing no significant difference between the intervention and control groups in energy (kcals) in seven studies (mean difference = 1 kcals [95% CI = ?115, 117]; p = 0.98), significant decreases in total fat (% energy) in five studies (Mean difference = ?4% [95% CI = ?5, ?3]; p = < 0.00001) and significant increases in fiber in six studies (Mean difference = 5.36 g [95% CI = 4, 7]; p = < 0.00001) and total carbohydrate (% energy) in four studies (Mean = 4% [95% CI= 2, 5]; p = < 0.00001).

In conclusion, results indicate that increased FV consumption increases micronutrient, carbohydrate and fiber intakes and possibly reduces fat intake, with no overall effect on energy intake. Therefore health benefits may act through an improvement in overall diet profile alongside increased micronutrient intakes.