Map‐based Visualizations Increase Recall Accuracy of Data

We investigate the memorability of data represented in two different visualization designs. In contrast to recent studies that examine which types of visual information make visualizations memorable, we examine the effect of different visualizations on time and accuracy of recall of the displayed data, minutes and days after interaction with the visualizations. In particular, we describe the results of an evaluation comparing the memorability of two different visualizations of the same relational data: node‐link diagrams and map‐based visualization. We find significant differences in the accuracy of the tasks performed, and these differences persist days after the original exposure to the visualizations. Specifically, participants in the study recalled the data better when exposed to map‐based visualizations as opposed to node‐link diagrams. We discuss the scope of the study and its limitations, possible implications, and future directions.     

Optics clustered to output unique solutions: a multi-laser facility for combined single molecule and ensemble microscopy

Optics clustered to output unique solutions (OCTOPUS) is a microscopy platform that combines single molecule and ensemble imaging methodologies. A novel aspect of OCTOPUS is its laser excitation system, which consists of a central core of interlocked continuous wave and pulsed laser sources, launched into optical fibres and linked via laser combiners. Fibres are plugged into wall-mounted patch panels that reach microscopy end-stations in adjacent rooms. This allows multiple tailor-made combinations of laser colours and time characteristics to be shared by different end-stations minimising the need for laser duplications. This setup brings significant benefits in terms of cost effectiveness, ease of operation, and user safety. The modular nature of OCTOPUS also facilitates the addition of new techniques as required, allowing the use of existing lasers in new microscopes while retaining the ability to run the established parts of the facility. To date, techniques interlinked are multi-photon/multicolour confocal fluorescence lifetime imaging for several modalities of fluorescence resonance energy transfer (FRET) and time-resolved anisotropy, total internal reflection fluorescence, single molecule imaging of single pair FRET, single molecule fluorescence polarisation, particle tracking, and optical tweezers. Here, we use a well-studied system, the epidermal growth factor receptor network, to illustrate how OCTOPUS can aid in the investigation of complex biological phenomena.     

Visualization of vortex core polarity in NiFe nanodots by tilted Fresnel images

We illustrate an approach which allows determining the out-of-plane component of the vortex core (polarity) in NiFe nanodots using Fresnel imaging in Lorentz electron microscopy. Using tilted Fresnel images, contribution of the polarity is introduced into the Fresnel image. However, this contribution is relatively small and a difference image from two symmetrically tilted Fresnel images must be used to eliminate the strong contribution from the in-plane curling magnetization and non-magnetic contrast. The sense of the polarity appears as a bipolar white-black contrast in the difference image on the tilt axis. A vortex core with a diameter of 16.5±2.5 nm is experimentally measured. Image tilting, displacement and geometrical distortion may disturb the difference image, and hence subtraction of the difference image must be aligned by cross-correlation. The method is also justified by a study of the observed contrast characteristic due to misalignment. The method is confirmed to be superior to similar approach with direct interpretation of information and more information subtracted.     

Involving the user Through Library 2.0

Libraries, as we know them today, can be defined by the term Library 1.0. This defines the way resources are kept on shelves or at a computer behind a login. These resources can be taken from a shelf, checked out by the library staff, taken home for a certain length of time and absorbed, and then returned to the library for someone else to avail of. Library 1.0 is a one-directional service that takes people to the information they require. Library 2.0 – or L2 as it is now more commonly addressed as – aims to take the information to the people by bringing the library service to the Internet and getting the users more involved by encouraging feedback participation. This paper presents an overview of Library 2.0 and introduces web 2.0 concepts.     

Thiamine concentrations in lake whitefish eggs from the upper Great Lakes are related to maternal diet

Thiamine deficiency is responsible for reproductive impairment in several species of salmonines in the Great lakes, and is thought to be caused by the consumption of prey containing thiaminase, a thiamine-degrading enzyme. Because thiaminase levels are extremely high in dreissenid mussels, fish that prey on them may be susceptible to thiamine deficiency. We determined thiamine concentrations in lake whitefish Coregonus clupeaformis eggs from the upper Laurentian Great Lakes to assess the potential for thiamine deficiency and to determine if thiamine concentrations in lake whitefish eggs were related to maternal diet. Mean thiamine concentrations in lake whitefish eggs were highest in Lake Huron, intermediate in Lake Superior, and lowest in Lake Michigan. Some fish had thiamine concentrations below putative thresholds for lethal and sublethal effects in salmonines, suggesting that some larval lake whitefish may currently be at risk of at least sublethal effects of low thiamine concentrations, although thiamine thresholds are unknown for lake whitefish. Egg thiamine concentrations in lake whitefish eggs were statistically significantly related to isotopic carbon signatures, suggesting that egg thiamine levels were related to maternal diet, but low egg thiamine concentrations did not appear to be associated with a diet of dreissenids. Egg thiamine concentrations were not statistically significantly related to multifunction oxidase induction, suggesting that lower egg thiamine concentrations in lake whitefish were not related to contaminant exposure.     

Links between type E botulism outbreaks, lake levels, and surface water temperatures in Lake Michigan, 1963-2008

Relationships between large-scale environmental factors and the incidence of type E avian botulism outbreaks in Lake Michigan were examined from 1963 to 2008. Avian botulism outbreaks most frequently occurred in years with low mean annual water levels, and lake levels were significantly lower in outbreak years than in non-outbreak years. Mean surface water temperatures in northern Lake Michigan during the period when type E outbreaks tend to occur (July through September) were significantly higher in outbreak years than in non-outbreak years. Trends in fish populations did not strongly correlate with botulism outbreaks, although botulism outbreaks in the 1960s coincided with high alewife abundance, and recent botulism outbreaks coincided with rapidly increasing round goby abundance. Botulism outbreaks occurred cyclically, and the frequency of outbreaks did not increase over the period of record. Climate change scenarios for the Great Lakes predict lower water levels and warmer water temperatures. As a consequence, the frequency and magnitude of type E botulism outbreaks in the Great Lakes may increase.     

Use of otolith chemistry to discriminate juvenile Chinook salmon (Oncorhynchus tshawytscha) from different wild populations and hatcheries in Lake Huron

Chinook salmon (Oncorhynchus tshawytscha) in Lake Huron consist of wild and hatchery-reared fish distributed among several populations. This study tested whether otolith chemistry can be used to identify the natal origin of Chinook salmon in this system. Concentrations of nine elements (Mg, K, Mn, Fe, Zn, Rb, Sr, Ba, and Pb) in the otoliths of Chinook salmon juveniles from 24 collection sites (17 streams and 7 hatcheries) around Lake Huron were analyzed using laser-ablation inductively-coupled mass spectrometry. Differences in otolith chemistry were found between rearing environments (wild and hatchery), among geological regions (Precambrian, Ordovician, Silurian, Devonian, and Carboniferous), and among collection sites. Discriminant function analysis showed high classification accuracies of juveniles to their rearing environment (wild versus hatchery, 82%), geological region (84%), and collection site (87%) of origin. With these values, there is excellent potential for otolith chemistry to be used to predict the natal origin of adults, and thus inform research and management of Chinook salmon in Lake Huron.     

Assessing Decentralised Water Solutions: Towards a Framework for Adaptive Learning

This paper reports on the use of qualitative analysis to inform a risk analysis framework for decentralised water systems. To realise the benefits from these technologies, a methodology is applied to learn from previous difficulties in implementing and managing them. A workshop process was used to capture stories from industry professionals on difficulties they have encountered in planning and implementation. Qualitative analysis of story narratives revealed stages where there was some type of development process failure; as well as failure modes and factors influencing the difficulties encountered. The analysis also generated insights: difficulties in one part of the development process tends to propagate to subsequent stages; system difficulties most often occurred in the policy stage of development due to institutional inertia and lack of adaptive governance; and the best indicator of problems with a decentralised system was complaints of poor water quality. Furthermore, this paper also provides a method to learn from past difficulties by identifying what data needs to be collected in order to populate a risk model which can be used for improving risk assessment of the development process for decentralised systems. This can provide a basis for better decision making, policy and guidelines; an important factor in mainstream acceptance.