Biological Implications of the Ribosome's Stunning Stereochemistry

The ribosome's striking architecture is ingeniously designed for its efficient polymerase activity in the biosynthesis of proteins, which is a prerequisite for cell vitality. This elaborate architecture is comprised of a universal symmetrical region that connects all of the ribosomal functional centers involved in protein biosynthesis. Assisted by the mobility of selected ribosomal nucleotides, the symmetrical region provides the structural tools that are required not only for peptide bond formation, but also for fast and smooth successive elongation of nascent proteins. It confines the path along which the A‐tRNA 3′‐end is rotated into the P‐site in concert with the overall tRNA/mRNA sideways movement, thus providing the required stereochemistry for peptide bond formation and substrate‐mediated catalysis. The extreme flexibility of the nucleotides that facilitate peptide bond formation is being exploited to promote antibiotic selectivity and synergism, as well as to combat antibiotic resistance.     

Experimental studies on shear failure of freeze-bonds in saline ice: Part I. Set-up, failure mode and freeze-bond strength

The strength of freeze-bonds in thin saline ice has been investigated through two series (in 2008 and 2009) of experiments in the Hamburg Ship Model Basin (HSVA) as a function of the normal confinement (σ), the submersion time (Δt) and the initial ice temperature (T_i). The freeze-bonds were mostly formed in a submerged state, but some were also formed in air. The experimental set-up was improved in the 2009 experiments. In 2008 a ductile-like failure mode dominated (78%), whereas in 2009 the brittle-like dominated (93%). We suggest that this is a combined ice and test set-up effect. The 2009 experimental procedures allowed for careful sample handling giving higher strength and it was softer. Both these things should provoke a more brittle-like force-time response. The average freeze-bond strength in brittle-like samples was around 9 kPa while in ductile-like samples was around 2 kPa. The maximum freeze-bonds strength were measured for short submersion times, from 1 to 20 min, and reached a maximum value of 30 kPa.A Mohr-Coulomb like failure model was found appropriate to represent the freeze-bond shear strength as function of the normal confinement. Saline freeze-bonds in saline water had cohesion/friction angle around 4 and 1.4 kPa/25° for the brittle- and ductile-like samples respectively, which fitted well with previously published data.A bell-shape dependence for τ_c vs. Δt was found, which agreed with the predictions by Shafrova and Høyland (2007). We suggest that this is essentially a freeze-bond porosity effect and propose three phases in time with subsequent cooling, heating and equilibrium to account for this trend. Qualitative experiments showed that the submersion time and the initial ice temperature were strongly coupled.To account for the connection between contact time, block dimensions and ice properties and the freeze-bond strength, dimensionless number were used. Fourier scaling was more appropriate than Froude scaling to scale freeze-bonds.The freeze-bonding made in air developed fast (in less than 30 s) when the ice was cold and dry, but no freeze-bonding occurred for the same contact times when the ice was warm and wet.     

Digging below the surface: Secondary analysis of TIMSS data for Hong Kong and its implications for educational reform

Abstract:

Hong Kong students outperform their counterparts in most other countries’ in mathematics in the Third International Mathematics and Science Study Repeat (TIMSS‐R) project, while their science performance is marginally above the international average. In order to probe below the surface of these achievement results, secondary analysis of the TIMSS‐R Hong Kong data was performed to identify factors that affect student achievement. Results of the secondary analysis relating to curriculum provision, teacher characteristics, and classroom conditions and climate are reported in this paper. Based on the results, some recommendations are proposed to meet the need for quality education in the new era.     

Microstructural evolution of nickel nanoparticle catalysts supported on gadolinium-doped ceria during autothermal reforming of iso-octane

The microstructure and composition of a nanoparticle Ni catalyst supported on gadolinium-doped ceria (Ce_1−xGd_xO_(4−x)/2) were studied using transmission electron microscopy (TEM), x-ray diffraction (XRD), and x-ray photoelectron spectroscopy (XPS). The support of the fresh catalyst exhibits a homogenous aggregation of crystalline grains, with sizes ranging between 20 nm and 50 nm. The crystalline structure of the fresh catalyst support is of the CeO₂ phase, in which gadolinium atoms exist in a solid solution of CeO₂. Nickel in the fresh catalyst is highly dispersed and forms granular crystals that are 5–30 nm in size on the surface of the ceria support. The support of the used catalyst exhibits a bimodal distribution of grains in which smaller grains have similar structure and morphology as those in the fresh catalyst, while the larger sized grains appear dull and exhibit nonfaceted crystal morphology resulting either from the sintering of a number of CeO₂ grains or by the occupation of highly defective crystals of Ce₂O₃ and CeO phases. A thin amorphous layer of carbon also covers most of the larger grains in the used catalyst. The Ni particles could not be imaged by TEM in the used catalyst, but energy dispersive x-ray spectroscopy (EDX) detected their presence. The XPS analysis of the catalyst samples suggests the participation of lattice O atoms from the ceria support in the catalytic reaction. The XPS data also show the presence of carbonate species and a higher hydrocarbon concentration in the used catalyst.     

Finding unusual medical time-series subsequences: algorithms and applications.

In this work, we introduce the new problem of finding time series discords. Time series discords are subsequences of longer time series that are maximally different to all the rest of the time series subsequences. They thus capture the sense of the most unusual subsequence within a time series. While discords have many uses for data mining, they are particularly attractive as anomaly detectors because they only require one intuitive parameter (the length of the subsequence), unlike most anomaly detection algorithms that typically require many parameters. While the brute force algorithm to discover time series discords is quadratic in the length of the time series, we show a simple algorithm that is three to four orders of magnitude faster than brute force, while guaranteed to produce identical results. We evaluate our work with a comprehensive set of experiments on electrocardiograms and other medical datasets.     

Energy and cost analysis of semi-transparent photovoltaic in office buildings

Solar energy conversion systems and daylighting schemes are important building energy strategies to produce clean energy, reduce the peak electrical and cooling demands and save the building electricity expenditures. A semi-transparent photovoltaic (PV) is a building component generating electricity via PV modules and allowing daylight entering into the interior spaces to facilitate daylighting designs. This paper studies the thermal and visual properties, energy performance and financial issue of such solar facades. Data measurements including solar irradiance, daylight illuminance and output power for a semi-transparent PV panel were undertaken. Using the recorded results, essential parameters pertaining to the power generation, thermal and optical characteristics of the PV system were determined. Case studies based on a generic reference office building were conducted to elaborate the energy and cooling requirements, and the cost implications when the PV facades together with the daylight-linked lighting controls were being used. The findings showed that such an integrated system could produce electricity and cut down electric lighting and cooling energy requirements to benefit the environmental, energy and economic aspects.     

Measurement of meat color using a computer vision system

The limits of the colorimeter and a technique of image analysis in evaluating the color of beef, pork, and chicken were investigated. The Minolta CR-400 colorimeter and a computer vision system (CVS) were employed to measure colorimetric characteristics. To evaluate the chromatic fidelity of the image of the sample displayed on the monitor, a similarity test was carried out using a trained panel. The panelists found the digital images of the samples visualized on the monitor very similar to the actual ones (P < 0.001). During the first similarity test the panelists observed at the same time both the actual meat sample and the sample image on the monitor in order to evaluate the similarity between them (test A). Moreover, the panelists were asked to evaluate the similarity between two colors, both generated by the software Adobe Photoshop CS3 one using the L*, a* and b* values read by the colorimeter and the other obtained using the CVS (test B); which of the two colors was more similar to the sample visualized on the monitor was also assessed (test C). The panelists found the digital images very similar to the actual samples (P < 0.001). As to the similarity (test B) between the CVS- and colorimeter-based colors the panelists found significant differences between them (P < 0.001). Test C showed that the color of the sample on the monitor was more similar to the CVS generated color than to the colorimeter generated color. The differences between the values of the L*, a*, b*, hue angle and chroma obtained with the CVS and the colorimeter were statistically significant (P < 0.05–0.001). These results showed that the colorimeter did not generate coordinates corresponding to the true color of meat. Instead, the CVS method seemed to give valid measurements that reproduced a color very similar to the real one.     

Magnetic Resonance Imaging of Strawberry (Fragaria vesca) Slices During Osmotic Dehydration and Air Drying

The aim of this study was to develop experience in acquiring water mobility and moisture data that could be used to develop improved models for predicting water loss during osmotic dehydration and/or air-drying. One-dimensional magnetic resonance imaging protocols were used to follow temporal and spatial changes in water mobility via T₂ profiles, water content via M₀ profiles, and structural shrinkage of strawberry slices during osmotic dehydration with 600 g/kg aqueous sucrose over 2 h. Those measurements were also made for 1 h during air-drying of normal and osmotically dried slices at 20, 30, 45 and 60 °C. Air-drying above 20 °C resulted in changes in the strawberry matrix, which suggests the need for a model that incorporates the interaction between the strawberry tissue and the water that diffuses during drying. Modelling of the air-drying of osmotically pretreated slices would be complicated by the variable amounts of sucrose solution remaining after osmotic dehydration.     

Small Molecule Receptor Binding Inhibitors with In Vivo Efficacy against Botulinum Neurotoxin Serotypes A and E

Botulinum neurotoxins (BoNTs) are the most poisonous substances in nature. Currently, the only therapy for botulism is antitoxin. This therapy suffers from several limitations and hence new therapeutic strategies are desired. One of the limitations in discovering BoNT inhibitors is the absence of an in vitro assay that correlates with toxin neutralization in vivo. In this work, a high-throughput screening assay for receptor-binding inhibitors against BoNT/A was developed. The assay is composed of two chimeric proteins: a receptor-simulating protein, consisting of the fourth luminal loop of synaptic vesicle protein 2C fused to glutathione-S-transferase, and a toxin-simulating protein, consisting of the receptor-binding domain of BoNT/A fused to beta-galactosidase. The assay was applied to screen the LOPAC1280 compound library. Seven selected compounds were evaluated in mice exposed to a lethal dose of BoNT/A. The compound aurintricarboxylic acid (ATA) conferred 92% protection, whereas significant delayed time to death (p < 0.005) was observed for three additional compounds. Remarkably, ATA was also fully protective in mice challenged with a lethal dose of BoNT/E, which also uses the SV2 receptor. This study demonstrates that receptor-binding inhibitors have the potential to serve as next generation therapeutics for botulism, and therefore the assay developed may facilitate discovery of new anti-BoNT countermeasures.     

Nantucket pine tip moth,Rhyacionia frustrana: Identification of two sex pheromone components

Two compounds identified as components of the sex pheromone system ofRhyacionia frustrana are (E)-9-dodecen-1-yl acetate (I) and (E)-9,11-dodecadien-1-yl acetate (II), which were found in female gland extracts in the ratio of 964, respectively. The identifications were based on chemical and instrumental analyses, electroantennogram studies, and field trapping tests. The optimum ratio for trapping maleR. frustrana is the range of 955 to 97.52.5 (III), when dispensed from rubber septa at a loading of ca. 1000/g/lure. In addition to these two compounds, evidence was obtained for the presence of dodecan-1-ol and (E)-9-dodecen-1-ol in female tip extracts and in female effluvium, and for dodecan-1-yl acetate in female tip extracts.Lepidoptera: Tortricidae: Olethreutinae.Supported in part by the Rockefeller Foundation and by National Science Foundation grants GB-38020 and PCM 78-13241.