State of the Art of Molecular Visualization in Immersive Virtual Environments

Visualization plays a crucial role in molecular and structural biology. It has been successfully applied to a variety of tasks, including structural analysis and interactive drug design. While some of the challenges in this area can be overcome with more advanced visualization and interaction techniques, others are challenging primarily due to the limitations of the hardware devices used to interact with the visualized content. Consequently, visualization researchers are increasingly trying to take advantage of new technologies to facilitate the work of domain scientists. Some typical problems associated with classic 2D interfaces, such as regular desktop computers, are a lack of natural spatial understanding and interaction, and a limited field of view. These problems could be solved by immersive virtual environments and corresponding hardware, such as virtual reality head-mounted displays. Thus, researchers are investigating the potential of immersive virtual environments in the field of molecular visualization. There is already a body of work ranging from educational approaches to protein visualization to applications for collaborative drug design. This review focuses on molecular visualization in immersive virtual environments as a whole, aiming to cover this area comprehensively. We divide the existing papers into different groups based on their application areas, and types of tasks performed. Furthermore, we also include a list of available software tools. We conclude the report with a discussion of potential future research on molecular visualization in immersive environments.     

Excitations and Their Temperature Dependence in Superfluid 4He Beyond the Roton

The temperature dependence of the dynamic structure factor S(Q,) for superfluid ⁴ He has been measured by inelastic neutron scattering for wave vectors between 2.3 and 2.6 Å ^–l. S(Q,) has two peaks: one sharp peak at low energies whose dispersion flattens out and whose strength decreases with increasing Q, and one broader peak at higher energies with a stronger dispersion. The first peak disappears gradually with increasing temperature, while only part of the second peak vanishes at T . This indicates the existence of a third broad contribution, related to atoms above the Bose condensate. The two-peak structure can be interpreted in terms of a Bose-condensate induced coupling of the two-particle spectrum to the one-particle spectrum. The overall temperature dependence is consistent with the density-quasiparticle picture.     

Effect of magnetic field and temperature on the voltage-current characteristics of YBCO superconductor

Voltage-current characteristics of YBCO superconductor was studied under magnetic field up to 0.4 T at different temperatures below T_c. The critical temperature decreases and the transition width broadens under magnetic field. V-I data below T_c were fitted to a power law expression V I^(T,B) in which (T,B) is found to decrease with increase of magnetic field and temperature, gradually approaching unity as T approaches T_c, being independent of magnetic field. Similarly, (T,B) approaches unity as magnetic field increases being independent of temperature.     

Logic programming for combinatorial problems

Combinatorial problems appear in many areas in science, engineering, biomedicine, business, and operations research. This article presents a new intelligent computing approach for solving combinatorial problems, involving permutations and combinations, by incorporating logic programming. An overview of applied combinatorial problems in various domains is given. Such computationally hard and popular combinatorial problems as the traveling salesman problem are discussed to illustrate the usefulness of the logic programming approach. Detailed discussions of implementation of combinatorial problems with time complexity analyses are presented in Prolog, the standard language of logic programming. These programs can be easily integrated into other systems to implement logic programming in combinatorics.     

The multi-agent programming contest from 2005–2010

The Multi-Agent Programming Contest is an annual international event on programming multi-agent systems: Teams of agents participate in a simulated cooperative scenario. It started in 2005 and is organised in 2010 for the sixth time. The contest is an attempt to stimulate research in the area of multi-agent system development and programming by (i) identifying key problems in the field and (ii) collecting suitable benchmarks that can serve as milestones for testing multi-agent programming languages, platforms and tools. This article provides a short history of the contest since it started and reports in more detail on the cows and cowboys scenario implemented for the 2008, 2009 and 2010 contest editions. We briefly discuss the underlying technological background and conclude with a critical discussion of the experiences and lessons learned.     

Convex combinations of strict t-norms

Alsina, Frank, and Schweizer posed a question whether a non-trivial convex combination of triangular norms can ever be a triangular norm. In this paper we deal with the class of strict t-norms with well-defined first partial derivatives along their zero borders. We show that the answer to the question is negative for certain couples of such t-norms and we state out possible further research.     

An integrated case-based reasoning and MCDM system for Web based tourism destination planning

The accelerating interaction between technology and tourism has changed radically the efficiency and effectiveness of tourism organizations, as well as how consumers interact with organizations. In this study, a Web based intelligent framework for travel agencies is proposed that offers customers a fast and reliable response service in a less costly manner. The proposed framework integrates case-based reasoning (CBR) system with a well-known multi criteria decision making (MCDM) technique, namely Analytic Hierarchy Process, to enhance the accuracy and speed in case matching in tourism destination planning. The integration of two techniques enables taking advantages of their strengths and complements each other’s weaknesses. A case study is performed to demonstrate how this framework can facilitate intelligent decision support by retrieving best-fitted responses for customers.