Nachweis von Clostridium botulinum Typ A, B, E und F mittels real-time-PCR

Clostridium botulinum is a Gram-positive, anaerobic, spore-performing bacterium with the ability to produce under certain conditions a protein with a characteristical neurotoxicity. Intoxications with C. botulinum toxin belong to the rare occuring food-poisonings; the mortality, however, is very high. C. botulinum produce seven different toxin types (type A to G), human intoxications are currently described to caused by toxin type A, B, E and F. C. botulinum is a strictly anaerobic growing bacterium, so the risk for the consumer’s health is mainly due to non-commercially produced food cans. A special form of botulism is the „infant botulism“. In contrast to the botulism of adults, where the disease is caused through toxin-containing food, spores of C. botulinum can sporulate and produce toxin in the intestines of an infant. The source of infant botulism can be honey, because it contains as a natural product C. botulinum spores. Because of the difficult and time-consuming cultural detection of C. botulinum, PCR methods to screen for the toxin genes A, B, E and F, which are relevant in the human medicine, have been used increasingly during the last years. In this presentation two real-time-PCR assays for C. botulinum, which can be applied in the routine laboratory, will be shown.

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Zusammenfassung: Clostridium botulinum z?hlt zu den anaeroben sporenbildenden Bakterien, die unter bestimmten Bedingungen in der Lage sind, sich in Lebensmitteln zu vermehren und ein Protein mit charakteristischer Neurotoxizit?t zu bilden. Intoxikationen mit Clostridium botulinum-Toxin geh?ren zu den seltenen lebensmittelassoziierten Intoxikationen; die Mortalit?t bei einer Erkrankung ist allerdings sehr hoch. C. botulinum produziert sieben unterschiedliche Toxintypen (Typ A-G), wobei für menschliche Erkrankungsf?lle bisher die Toxintypen A, B, E und F beschrieben sind. Da es sich bei den genannten Keimen um strikt anaerob wachsende Bakterien handelt, stellen vor allem nicht kommerziell hergestellte Konserven, wie z. B. Kesselkonserven, ein Risiko für den Verbraucher dar. Als besondere Form des Botulismus wird der so genannte „S?uglingsbotulismus“ beschrieben. Im Gegensatz zur der Erkrankung, die bei Erwachsenen auftritt und die durch die Aufnahme des bereits toxinhaltigen Lebensmittels verursacht wird, k?nnen Sporen von C. botulinum im Darm von S?uglingen auskeimen und dort Toxine bilden. Ursache für den S?uglingsbotulismus ist h?ufig Honig, der als Naturprodukt C. botulinum-Sporen enthalten kann. Da der kulturelle Nachweis von C. botulinum aufwendig und eine endgültige Differenzierung schwierig ist, wird im Bereich der Routinediagnostik seit einigen Jahren verst?rkt mit PCR-Nachweisverfahren gearbeitet, die ein schnelles Screening auf das Vorhandensein der vier in der Humanmedizin relevanten Toxingene A, B, E und F erm?glichen. In dieser Arbeit werden zwei real-time-PCR-Systeme vorgestellt, die im Bereich der Routinediagnostik einsetzbar sind.

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Eingegangen: 19. Januar 2007     

Development of an event-specific detection method for genetically modified rice Kefeng?6 by quantitative real-time PCR

The genetically modified (GM) rice Kefeng?6 has gained resistance against several rice pests by inserting the cpti and cry1Ac genes. As this transgenic line is not approved for import, processing and cultivation in the European Union (EU), sensitive and specific detection methods need to be available to monitor any illegal presence of Kefeng?6 in food products within the EU. The aim of this study was to develop and validate an event-specific detection method by means of quantitative real-time PCR (qPCR) for the detection of Kefeng?6 in foodstuff. A primer pair and hydrolysis probe were designed according to the right border junction sequence of the transgene. The qPCR assay was validated according to the ENGL/EURL-GMFF guidelines for GMO testing and is presented according to the MIQE guidelines. The in-house validation process resulted in a limit of detection of 5 DNA copies of the transgene with confidence intervals (95?%) between 0.07 and 0.52, a PCR efficiency of 105?% and a correlation coefficient (R ²) value of 0.9997. The specificity of the assay was tested by end-point PCR, gel electrophoresis and subsequent sequencing of the PCR products. By testing DNA of several GM and non-GM crops, cross reactivity of the assay was not observed. Further, 35 food products were analyzed for the presence of Kefeng?6 by means of the event-specific detection method. For 9 out of 35 samples, PCR products for Kefeng?6 DNA were observed.     

Influence of copigment derived from Tasmannia pepper leaf on Davidson's plum anthocyanins

Davidson's plum (Davidsonia pruriens, F. Muell.), a native to Australian rainforests, large, crimson-red fruit, which superficially resembles plum, has been commercially cultivated in Australia since 1990s. The current production volume exceeds market demands therefore this study was designed to evaluate the suitability of Davidson's plum extract as a source of anthocyanin-based food colorant. The stability of the Davidson's plum extract towards heat treatment at 95 °C was higher than that of commercial mulberry colorant, but inferior to colorants derived from red cabbage and purple sweetpotato. An addition of a variety of phenolic acids significantly increased color intensity indicating the formation of copigmentation complexes. Commercial chlorogenic acid as well as extract from a native Australian herb rich in chlorogenic acid, Tasmannia pepper leaf (Tasmannia lanceolata, R. Br.), were both tested in model soft drink solutions subjected to light irradiation and heat treatment. In both cases, the addition of the copigment resulted in a lasting increase in color intensity. In conclusion, Davidson's plum extract can successfully be utilized as a source of natural food color. Extract from Tasmania pepper leaf can be used as a co-pigment for Davidson's plum anthocyanins. PRACTICAL APPLICATION: The color properties of an anthocyanin colorant derived from the native Australian fruit Davidson's plum are comparable to those of mulberry, which is currently applied as a food colorant in Australian food products. Utilization of Davidson's plum fruit as a source of natural color will allow the industry to increase the range of natural pigments and will create new opportunities for the emerging native food industry.     

Effect of spin polarization of Ni(1 1 0) surface on Auger neutralization for grazing scattering of He ions

The survival of ions during grazing scattering of keV He⁺ ions from a clean Ni(1 1 0) surface is studied as function of target temperature. We observe ion fractions in the scattered beams of typically 10⁻³ which show a slight increase with temperature of the target surface. From computer simulations of projectile trajectories we attribute this enhancement for ion fractions to effects of thermal vibrations of lattice atoms on the survival of ions in their initial charge state. Based on concepts of Auger neutralization, we discuss the role of the spin polarization of target electrons on charge transfer. We do not find corresponding signatures in our data and conclude that in the present case of Ni(1 1 0) the spin polarization has to be small.     

Agriculture and food quality and safety certification agencies in four Chinese cities

Investigations of certification agencies were conducted in four Chinese cities: Guangzhou, Shenzhen, Hangzhou and Qingdao. Based on an analysis of the data and information obtained, the status and character of agro-food certification in China were assessed. The main obstacle for development of agro-food certification was identified as the lack of market acceptance for it. In conclusion, the paper provides some suggestions for improving agro-food certification in China.     

Distribution of HIV type 1 (HIV-1) in blood components: detection and significance of high levels of HIV-1 associated with platelets

BACKGROUND: Although inactivation of enveloped viruses transmitted by plasma derivatives has been successful, no methods for virus inactivation or removal have been established for platelet concentrates or red cell (RBC) components. Relatively little is known regarding the extent or significance of virus interactions with the cellular constituents in these components. STUDY DESIGN AND METHODS: Units of whole blood were collected from six HIV type 1 (HIV-1)-positive, asymptomatic individuals and separated into peripheral blood mononuclear cells (PBMNCs), cell-free plasma, white cell-reduced platelet concentrate, and white cell-reduced RBCs. DNA and RNA polymerase chain reaction and virus culture methods were used to study the compartmentalization of HIV-1 immediately after component preparation and after storage. RESULTS: As expected, HIV DNA and infectious virus were detected in fresh blood and in PBMNCs, and virion-associated RNA was detected in fresh plasma from all six donors. The levels of viral nucleic acids in these preparations remained relatively stable with 4 degrees C storage, whereas infectivity of PBMNCs was rapidly lost. Washed RBCs tested negative for HIV in all assays at all time points. Platelets retained high levels of HIV RNA (but not infectivity) after extensive washing, as well as after storage at 4 and 22 degrees C. High-level platelet-associated HIV-1 was also demonstrated in samples collected during early seroconversion. Periseroconversion and postseroconversion levels of platelet-associated HIV-1 correlated with the level of plasma viremia and with the rate of progression to AIDS. Cell-free virus from donor plasma and tissue culture fluid rapidly and firmly attached to platelets from noninfected donors. Infectivity of tissue culture virus bound to platelets was demonstrated in vitro. CONCLUSION: Significant levels of HIV-1 are associated with platelets during all stages of infection. Platelet-associated HIV could either mediate virus clearance or facilitate virus dissemination and expanded tropism. Finally, virus inactivation research must address virus associations with platelets.     

Use of continuous stacking hybridization in sequencing using modified oligonucleotide matrices

The opportunity of DNA sequencing by hybridization with oligonucleotide matrix (SHOM) with simultaneously use continuous stacking hybridization and gapped-matrices is considered. The analysis of reconstruction efficiency for various combinations matrices and l-oligonucleotides libraries were made. In most cases combine use of continuous stacking hybridization and gapped matrices permits to decrease the number of additional stacking hybridization twice without lost of efficiency.