Class I alleles of the bovine major histocompatibility system and their association with economic traits

A total of 179 Holstein cows from the Agriculture Canada Research Branch herd at Ottawa and 271 progeny-tested Canadian Holstein bulls were typed for 37 lymphocyte antigens. Each antigen appears to be controlled by a distinct, codominant allele of the bovine lymphocyte antigen (BoLA)-A locus, which is a class I locus of the bovine major histocompatibility system. Only 10 and 16 alleles were present in Holstein cows and bulls, respectively. The association between bovine lymphocyte antigens and economically important traits was examined in gene substitution models. Separate models were used for the cow and bull data. The substitution of the W6.1 allele for the W10 allele was associated with increased protein yield in the milk in both analyses. The results were also consistent with a previous report that the presence of the W10 allele was associated with increased fat percentage compared with some, but not all, of the other alleles. However, more research is necessary to confirm these findings and to determine the biological mechanisms underlying these associations.     

IsomiR-eQTL: A Cancer-Specific Expression Quantitative Trait Loci Database of miRNAs and Their Isoforms

The identification of expression quantitative trait loci (eQTL) is an important component in efforts to understand how genetic variants influence disease risk. MicroRNAs (miRNAs) are short noncoding RNA molecules capable of regulating the expression of several genes simultaneously. Recently, several novel isomers of miRNAs (isomiRs) that differ slightly in length and sequence composition compared to their canonical miRNAs have been reported. Here we present isomiR-eQTL, a user-friendly database designed to help researchers find single nucleotide polymorphisms (SNPs) that can impact miRNA (miR-eQTL) and isomiR expression (isomiR-eQTL) in 30 cancer types. The isomiR-eQTL includes a total of 152,671 miR-eQTLs and 2,390,805 isomiR-eQTLs at a false discovery rate (FDR) of 0.05. It also includes 65,733 miR-eQTLs overlapping known cancer-associated loci identified through genome-wide association studies (GWAS). To the best of our knowledge, this is the first study investigating the impact of SNPs on isomiR expression at the genome-wide level. This database may pave the way for researchers toward finding a model for personalised medicine in which miRNAs, isomiRs, and genotypes are utilised.     

The yields of extracted leaf protein from lucerne (Medicago sativa L.)

The effects of fertilisers, frequency of cutting, row spacing and simazine on the yields of dry matter and extractable protein from lucerne (Medicago sativa L.) were studied using the laboratory-scale pulper and press. Between 40 and 65% protein nitrogen was extractable; extractability was not affected by the various treatments but altered with season. Lucerne responded with increased yields of dry matter and extractable protein to fertilisers, simazine (35 g/ha) and rows spaced at 30.5 cm. Six or 8 harvests were found to give greater yields than 5 harvests in 180 days. The annual yields of extractable protein reached 3100 kg/ha and it is felt that better control of pests could lead to even greater yields.     

Helical Flow of a Sutterby Model Fluid

The problem of helical flow of a Sutterby model fluid has been analyzed numerically using a finite difference technique. Sutterby model fluid is one of the most important non-Newtonian fluids representing constitutive equations for high polymer aqueous solutions of CMC, HEC, and MC, and hence the problem is of practical significance. Computations have been made for the case when the inner cylinder rotates about the common axis with constant angular velocity and the outer cylinder is at rest, while a constant pressure gradient is acting on the axis of rotation. The dimensionless velocity profiles, volumetric flow rate, torque, and pressure distribution have been calculated for various values of the model parameters and the radius ratio.     

Deduction of a facile method to construct Antheraea mylitta silk fibroin/gelatin blend films for prospective biomedical applications

Blend films of two types (I and II) were prepared by mixing Antheraea mylitta silk fibroin (AMF) and gelatin solution in various blend ratios via the solution casting method. Two different crosslinkers, namely glutaraldehyde and genipin, were used during blend preparation. The structural characteristics and thermal properties of the blend films were examined by Fourier transform infrared (FTIR) spectroscopy, X‐ray diffraction (XRD), Thermogravimetric analysis (TGA) and Diffrential scanning calorimetery (DSC). The FTIR spectra showed conformational alterations in type I blend films while type II films attained high β‐sheet crystallinity. The XRD diffractograms presented a high degree of crystallinity in type II blend films compared to type I, which showed an almost amorphous structure. Further, thermal and biological studies were conducted on type II films. According to the TGA thermograms, the degradation temperature of the crosslinked blend films shifted compared to pure gelatin and pure AMF films. Partial miscibility of the two components was indicated by DSC thermograms of the blends. The high water uptake capacity of type II blend films was found to imitate hydrogel behaviour. The blend films did not show any toxicity in 3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyl tetrazolium bromide (MTT) assay and supported L929 fibroblast cell spreading and proliferation. The biodegradation of the blend films was significantly faster than the pure silk film. © 2020 Society of Industrial Chemistry     

Free Vibration of Thermally Pre/Post-Buckled Circular Thin Plates Embedded with Shape Memory Alloy Fibers

Axisymmetric deformations of a uniformly heated pre-buckled and post-buckled thin circular plate reinforced with shape memory alloy (SMA) fibers placed in the radial direction only are studied. Effects of von Kármán's nonlinearities are incorporated in the problem formulation. The matrix is assumed to be linear thermoelastic and the thermo-mechanical response of the SMA is modeled by one-dimensional constitutive relation. By assuming that plate's deflections can be additively decomposed into three parts, namely radial displacements of a pre-buckled plate, radial and lateral displacements during post-buckling deformations, and infinitesimal radial and lateral displacements during vibration of a post-buckled plate, boundary-value problems for determining these displacements for plate edges either simply supported or clamped have been formulated. The coupled nonlinear differential equations have been numerically solved by the shooting method that has been verified by good agreement between the presently computed results with those available in the literature. The dependence of the first three frequencies upon the temperature rise, for both pre-buckled and post-buckled plates, has been delineated. Characteristic curves relating the frequency with the temperature rise for different values of the volume fraction and the pre-strain in the SMA fibers are exhibited. It is found that reinforcement of an aluminum plate with SMA fibers changes plate's natural frequencies and enhances its resistance to buckling due to temperature rise.     

Synthesis and biological properties of novel pyridinioalkanoyl thiolesters (PATE) as anti-HIV-1 agents that target the viral nucleocapsid protein zinc fingers

Nucleocapsid p7 protein (NCp7) zinc finger domains of the human immunodeficiency virus type 1 (HIV-1) are being developed as antiviral targets due to their key roles in viral replication and their mutationally nonpermissive nature. On the basis of our experience with symmetrical disulfide benzamides (DIBAs; Rice et al. Science 1995, 270, 1194-1197), we synthesized and evaluated variants of these dimers, including sets of 4,4'- and 3,3'-disubstituted diphenyl sulfones and their monomeric benzisothiazolone derivatives (BITA). BITAs generally exhibited diminished antiviral potency when compared to their disulfide precursors. Novel, monomeric structures were created by linking haloalkanoyl groups to the benzamide ring through -NH-C(=O)- (amide) or -S-C(=O)- (thiolester) bridges. Amide-linked compounds generally lacked antiviral activity, while haloalkanoyl thiolesters and non-halogen-bearing analogues frequently exhibited acceptable antiviral potency, thus establishing thiolester benzamides per se as a new anti-HIV chemotype. Pyridinioalkanoyl thiolesters (PATEs) exhibited superior anti-HIV-1 activity with minimal cellular toxicity and appreciable water solubility. PATEs were shown to preferentially target the NCp7 Zn finger when tested against other molecular targets, thus identifying thiolester benzamides, and PATEs in particular, as novel NCp7 Zn finger inhibitors for in vivo studies.