Development of a Weather Forecasting Code: A Case Study

Computational science is increasingly supporting advances in scientific and engineering knowledge. The unique constraints of these types of projects result in a development process that differs from the process more traditional information technology projects use. This article reports the results of the sixth case study conducted under the support of the Darpa High Productivity Computing Systems Program. The case study aimed to investigate the technical challenges of code development in this environment, understand the use of development tools, and document the findings as concrete lessons learned for other developers' benefit. The project studied here is a major component of a weather forecasting system of systems. It includes complex behavior and interaction of several individual physical systems (such as the atmosphere and the ocean). This article describes the development of the code and presents important lessons learned.     

绿茶提取物对乳清蛋白发泡特性、流变特性和热力学特性的影响

本文选用三种不同的绿茶提取物(CGT、NGT和UGT,分别来自中国、日本和肯尼亚),探讨绿茶提取物对乳清蛋白的发泡特性、流变特性和热力学特性的影响。研究结果表明:绿茶提取物可以显著提高乳清蛋白的发泡能力、发泡稳定性及胶体强度;绿茶提取物不影响乳清蛋白变性温度,但可以使其热焓值显著下降。研究结果暗示乳清蛋白与绿茶提取物中的一些主要组分发生了协同相互作用。     

Architectures for Silicon Nanoelectronics and Beyond

Although nanoelectronics won't replace CMOS for some time, research is needed now to develop the architectures, methods, and tools to maximally leverage nanoscale devices and terascale capacity. Addressing the complementary architectural and system issues involved requires greater collaboration at all levels. The effective use of nanotechnology calls for total system solutions     

The Glu318Gly mutation of the presenilin-1 gene does not necessarily cause Alzheimer's disease

In early-onset familial Alzheimer's disease (AD) pathogenic mutations have been found in the amyloid precursor protein (APP) gene and in the presenilin (PS)-1 and PS-2 genes. We screened for mutations in these genes in 20 patients with familial AD from the Finnish population. In addition, we sampled 41 sporadic AD patients and 59 controls to test for mutations identified in our familial AD cases. We detected an A-to-G transition in the PS-1 gene, resulting in a glutamic acid (Glu)-to-glycine (Gly) substitution at codon 318 in 2 familial and 2 sporadic AD patients. The Glu318Gly mutation has previously been reported to cause AD. We also found the Glu318Gly mutation in 4 healthy aged controls (range, 74-87 years). We thus conclude that the mutation is most likely a rare polymorphism not related to AD.     

Interlingua-based English–Korean Two-way Speech Translation of Doctor–Patient Dialogues with CCLINC

Development of a robust two-way real-time speech translationsystem exposes researchers and system developers to various challenges of machine translation(MT) and spoken language dialogues. The need for communicating in at least two differentlanguages poses problems not present for a monolingual spoken language dialogue system,where no MT engine is embedded within the process flow. Integration of various componentmodules for real-time operation poses challenges not present for text translation. In this paper,we present the CCLINC (Common Coalition Language System at Lincoln Laboratory) English–Koreantwo-way speech translation system prototype trained on doctor–patient dialogues,which integrates various techniques to tackle the challenges of automatic real-time speechtranslation. Key features of the system include (i) language–independent meaning representation which preserves the hierarchicalpredicate–argument structure of an input utterance, providing a powerful mechanism for discourse understanding of utterances originating from different languages,word-sense disambiguation and generation of various word orders of many languages, (ii) adoptionof the DARPA Communicator architecture, a plug-and-play distributed system architecturewhich facilitates integration of component modules and system operation in real time, and (iii)automatic acquisition of grammar rules and lexicons for easy porting of the system to differentlanguages and domains. We describe these features in detail and present experimental results.     

RasGRP, a Ras guanyl nucleotide- releasing protein with calcium- and diacylglycerol-binding motifs

RasGRP, a guanyl nucleotide-releasing protein for the small guanosine triphosphatase Ras, was characterized. Besides the catalytic domain, RasGRP has an atypical pair of "EF hands" that bind calcium and a diacylglycerol (DAG)-binding domain. RasGRP activated Ras and caused transformation in fibroblasts. A DAG analog caused sustained activation of Ras-Erk signaling and changes in cell morphology. Signaling was associated with partitioning of RasGRP protein into the membrane fraction. Sustained ligand-induced signaling and membrane partitioning were absent when the DAG-binding domain was deleted. RasGRP is expressed in the nervous system, where it may couple changes in DAG and possibly calcium concentrations to Ras activation.     

Saturation of ecosystems with toxic metals in Sudbury basin, Ontario, Canada

Mining and resource recovery activities have not been kind to ecosystems in the Sudbury basin, Ontario. The combination of logging, smelting, fires and erosion resulted in an unusual anthropogenic ecosystem of denuded barren land with lifeless lakes, or a micro-desert. Since the 1970s, however, the concerted efforts made to reduce the emissions and rehabilitate parts of the degraded ecosystem have resulted in improvements in water quality, and recoveries in phytoplankton, zooplankton, zoobenthos and fish communities but have had little impact on toxic metal concentrations in many lakes. We show that most of the catchments in the Sudbury basin have become saturated with Cu and Ni, and some with Zn and Pb. It is estimated that mobilization of metals stored in soils and glacial overburden by surface runoff, groundwater drainage and wind re-working of tailings can sustain the high concentrations of Cu and Ni in many lakes for well over 1000 years. Strategies to immobilize the pollutant metals in the watershed rather than further emission controls may be required for dealing with high levels of toxic metals in surface waters of the saturated ecosystems.     

Oncogene rearrangement in non-Hodgkin's lymphoma with a 14q+ chromosome of unknown origin

Southern blot analysis was performed with a panel of DNA probes to detect rearrangements of c-myc, bcl-1, bcl-2 and bcl-3 in 14 cases of B-cell non-Hodgkin's lymphoma (NHL) with a clonal cytogenetic rearrangement involving the chromosome 14q32 locus and no known donor chromosome [t(14;?)(q32;?)]. In our experience, 21% of all chromosomal abnormalities involving the 14q32 locus in B-cell NHL are of this type. We found oncogene rearrangements in five of the 14 cases: bcl-1 rearrangement on one mantle zone lymphoma, bcl-2 rearrangements in two follicular lymphomas, and c-myc rearrangements in two small noncleaved cell lymphomas. We conclude that a 14q32+ abnormality of unknown origin is a relatively frequent karyotypic finding in B-cell NHL. In one third of the cases, known oncogenes that have been previously described in reciprocal translocations involving the immunoglobulin heavy chain locus were shown to be involved in the 14q32+ abnormality. The translocations in the other cases are likely to have involved one of the above oncogenes with breakpoints not revealed by the probes employed, other known oncogenes, or oncogenes that have not yet been identified.