ScalaTrace: Scalable compression and replay of communication traces for high-performance computing

Characterizing the communication behavior of large-scale applications is a difficult and costly task due to code/system complexity and long execution times. While many tools to study this behavior have been developed, these approaches either aggregate information in a lossy way through high-level statistics or produce huge trace files that are hard to handle.     

Iron impregnation on the amorphous shell of vapor grown carbon fibers and the catalytic growth of secondary nanofibers

Vapor grown carbon fibers (VGCFs) with diameters of several microns were synthesized and investigated by high resolution transmission electron microscopy. It was found that the shell of the VGCFs consisted of densely-packed domains embedded in loosely-packed matrix, and both were highly amorphous. Regular edge planes as observed on the surface of fishbone nanofibers do not exist on VGCFs. Hence, surface treatment is more important for the deposition of catalysts. Ammonium ferric citrate (AFC) was employed for the impregnation of iron, where the high viscosity of the aqueous solution of AFC is beneficial. Calcination was found to be a key step to improve the dispersion of the iron particles, which can be attributed to enhanced interactions between iron and carbon due to the gasification of carbon occurring at the iron–carbon interface. Quantitative analysis by X-ray photoelectron spectroscopy showed that the calcination of the supported AFC led to a higher atomic concentration of iron on the surface, indicating smaller particle size and a higher dispersion. Secondary carbon nanofibers were grown subsequently on the VGCFs from cyclohexane. The specific surface area was enhanced considerably, from less than 1 m² g^? 1 to 106 m² g^? 1 after the growth of the secondary nanofibers. The obtained composites are promising materials as structured support in heterogeneous catalysis.     

Elastic properties of porous oxide ceramics prepared using starch as a pore-forming agent

The elastic properties, in particular the tensile modulus (Young's modulus) and Poisson ratio, of porous alumina, zirconia, and alumina–zirconia composite ceramics are studied using the resonance frequency method and the results compared with theoretical predictions. Starch is used as a pore-forming agent, so that the resulting microstructure is essentially of the matrix-inclusion type (with large bulk pores, connected by small throats when a percolation threshold is exceeded). It is found that for this type of microstructure the porosity dependence of the Young's modulus is significantly below the upper Hashin–Shtrikman bound and the power-law prediction; it corresponds well, however, to a recently proposed exponential relation and to an empirical volume-weighted average of the upper and lower Hashin–Shtrikman bounds. Results for all three types of ceramics indicate that – in the porosity range considered, i.e. up to approximately 50% – the Poisson ratio depends only slightly on porosity.     

Compositional and structural evolution of sputtered Ti-Al-N

The compositional and structural evolution of Ti-Al-N thin films as a function of the total working gas pressure (p_T), the N₂-to-total pressure ratio (p_N2/p_T), the substrate-to-target distance (ST), the substrate position, the magnetron power current (I_m), the externally applied magnetic field, and the energy and the ion-to-metal flux ratio of the ion bombardment during reactive sputtering of a Ti_0.5Al_0.5 target is investigated in detail. Based on this variation we propose that the different poisoning states of the Ti and Al particles of the powder-metallurgically prepared Ti_0.5Al_0.5 target in addition to scattering and angular losses of the sputter flux cause a significant modification in the Al/Ti ratio of the deposited thin films ranging from ~ 1.05 to 2.15.The compositional variation induces a corresponding structural modification between single-phase cubic, mixed cubic-hexagonal and single-phase hexagonal. However, the maximum Al content for single-phase cubic Ti_1−xAl_xN strongly depends on the deposition conditions and was obtained with x = 0.66, for the coating deposited at 500 °C, p_T = 0.4 Pa, ST = 85 mm, and p_N2/p_T = 17%. Our results show, that in particular, the N₂-to-total pressure ratio in combination with the sputtering power density of the Ti_0.5Al_0.5 compound target has a pronounced effect on the Al/Ti ratio and the structure development of the coatings prepared.     

Identification of Chemicals Emitted by Calling Males of the Sapote Fruit Fly, <Emphasis Type="Italic">Anastrepha serpentina</Emphasis>

Emissions from sexually active Anastrepha serpentina males were collected by solid-phase microextraction. Calling behavior of wild-type males showed no clear peak during the day, except that it was evident less frequently immediately after daybreak and just before dark. Calling by laboratory males was highest between 8 and 11 h after onset of the photophase, and mating by wild flies occurred mostly between 6 and 10 h after onset of the photophase. Two major components of male emissions were identified as 2,5-dimethylpyrazine (DMP) and 3,6-dihydro-2,5-dimethylpyrazine (DHDMP). DHDMP was synthesized, and the identity of the natural product confirmed by comparison of gas chromatographic retention times and mass spectrum. Emissions of DMP and DHMP were greatest during peak calling behavior, with males emitting up to 1.8 and 3.3 μg/h of DMP and DHDMP, respectively. A minor component, which did not vary with time of day, was identified as 2,3,5-trimethylpyrazine. To our knowledge, this is the first report of 3,6-dihydro-2,5-dimethylpyrazine in nature. D. C. Robacker and R. J. Bartelt are now retired.     

How indirect supportive digital help during and after solving physics problems can improve problem-solving abilities

This study investigates the effectiveness of computer-delivered hints in relation to problem-solving abilities in two alternative indirect instruction schemes. In one instruction scheme, hints are available to students immediately after they are given a new problem to solve as well as after they have completed the problem. In the other scheme, hints are only available as worked out problems after students have finished their solution. The instruction schemes are supplied by means of a web-based program, Physhint, which supports the development of strategic knowledge [Pol, H. J., Harskamp, E. G., & Suhre, C. J. M. (2008). The effect of the timing of instructional support in a computer-supported problem-solving program for students in secondary physics education. Computers in Human Behavior, 24, 1156–1178]. This program supports novice problem solvers while undertaking physics problems concerned with forces by providing hints structured in accordance with Schoenfeld’s episodes [Schoenfeld, A. H. (1992). Learning to think mathematically: Problem solving, metacognition, and sense making in mathematics. In D. A. Grouws (Ed.), Handbook of research on mathematics teaching (pp. 224–270). New York: McMillan Publishing].     

Viscous dissipation and apparent wall slip in capillary rheometry of ice cream

We have analysed sets of capillary rheometry data (0.3 s^?1 ≤ γ_app ≤ 360 s^?1) for a commercial ice cream as it flowed from a freezer on an industrial flow line. Pressure drop measurements were used and particular attention was paid to viscous dissipation effects. A semi-analytical model presented by Bird in 1955 indicated that over one third of the data points were subject to local wall heating, which was consistent with available temperature measurements. The filtered data were used to construct a viscosity function which, when implemented in a detailed CFD simulation of the flow, predicted the observed flow curve behaviour. The results demonstrate that viscous dissipation can be significant in ice cream and that interpretation of this behaviour in terms of wall slip is erroneous.     

Effects of coxsackievirus B3 infection on the acute-phase protein metallothionein and on cytochrome P-4501A1 involved in the detoxification processes of TCDD in the mouse

During acute infections, the synthesis of acute-phase proteins and other proteins participating in the host defence are stimulated in the liver and kidney. In previous studies of coxsackievirus B3 (CB3) infection in mice, we found that cadmium (Cd) accumulates in the kidney, whereas 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) accumulates in the liver. To study if CB3 infection affects the synthesis of the Cd-binding protein metallothionein (MT) and the TCDD-binding/detoxifying cytochrome P-450 (CYP-450) isozyme CYP1A1, the basal and TCDD-induced levels of serum MT and liver CYP1A1 isozyme were determined in healthy and CB3-infected A/J mice. Furthermore, because interferons affect CYP450 activity, the serum levels of the interferons alpha (IFN-alpha) and -beta (IFN-beta) were measured in CB3-infected mice and in mice treated with the interferon-inducer polyinosinic/polycytidylic acid (poly I/C). Virus or poly I/C was administered intraperitoneally (i.p.) on day 0 and 500 ng TCDD/kg bodyweight on day 1. On day 4, CB3 infection had induced MT approximately 10-fold, regardless of TCDD treatment (P < 0.01 in infected mice and P < 0.001 in infected, TCDD-treated mice). TCDD alone induced a 10-fold increase in CYP1A1 activity (P < 0.001), whereas infection alone suppressed the normal CYP1A1 activity by 75% (P < 0.001). Infection also suppressed the TCDD-induced CYP1A1 activity by approximately 30% (n.s.). Poly I/C suppressed CYP1A1 by 20-25% (n.s.) at both basal and TCDD-induced levels. Serum IFN-alpha and IFN-beta levels were undetectable in controls, in TCDD-treated and in the poly I/C-treated groups on day 4, probably because the short IFN peak is detectable only hours after injection. Conversely, on day 4 of the infection, IFN-alpha and IFN-beta were consistently raised in the TCDD-treated infected mice, whereas increased IFNs as a result of infection alone could be detected in only one individual. These results suggest that the normal host responses during acute infections down-regulate detoxifying processes in favour of acute-phase protein synthesis. This may explain the observed changed pattern of accumulation, excretion and toxicity of the environmental pollutants cadmium and TCDD during this common virus infection.     

Biosynthesis of novel thermoplastic polythioesters by engineered Escherichia coli

The development of non-petrochemical sources for the plastics industry continues to progress as large multinationals focus on renewable resources to replace fossil carbon. Many bacteria are known to accumulate polyoxoesters as water-insoluble granules in the cytoplasm. The thermoplastic and/or elastomeric behaviour of these biodegradable polymers holds promise for the development of various technological applications. Here, we report the synthesis and characterization of microbial polythioesters (PTEs), a novel class of biopolymers of general technological relevance. Biosynthesis of PTE homopolymers was achieved using a recombinant strain of Escherichia coli that expressed a non-natural pathway consisting of a butyrate kinase, a phosphotransbutyrylase, and a PHA synthase. Different homopolymers were produced, consisting of either 3-mercaptopropionate, 3-mercaptobutyrate, or 3-mercaptovalerate repeating units, if the respective mercaptoalkanoic acids were provided as precursor substrates to the fermentative process. The PTEs contributed up to 30% (w/w) of the cellular dry weight and were identified as hydrophobic inclusions in the cytoplasm. The chemical and stereochemical homogeneity of the purified PTEs were identified by different methods, and the estimated physical properties were compared to the oxypolyester equivalents, revealing low crystalline order and, for the poly(3-mercaptopropionate) improved thermal stability. The ability to produce PTEs through a biosynthetic route opens up new avenues in the field of biomaterials.     

Stereoselective release behaviors of imprinted bead matrices

In this work, the stereoselective release behaviors of “low”-swelling molecularly imprinted polymer (MIP) bead matrices in pressed-coat tablet type were studied. Either R-propranolol selective MIP or S-propranolol selective MIP was combined with excipients and racemic propranolol and fabricated into the matrix. Subsequently, the release of different propranolol enantiomers from the matrices was examined. Also, the microscopic structure of the hydrated “low”-swelling MIP matrix was determined using a cryogenic scanning electron microscope in order to compare with that of the hydrated “high”-swelling MIP matrix. In vitro release profiles of the “low”-swelling matrices showed a difference in the release of enantiomers, in that the non-template isomer was released faster than the template isomer. However, in the last phase of dissolution this difference reduced and later reversed, resulting at last in the type of specificity being similar to that obtained previously with “high”-swelling MIP matrices.

n summary, MIP beads can be fashioned into matrices and incorporated into different formulations to regulate the resultant stereoselectivity. From the behaviors of stereoselective release observed in MIP matrices, we can conclude that the enantioselective-controlled delivery mechanism of MIPs via formulations depends on the relative affinity of the enantiomer for the template sites, as well as the nature of the polymer, such as hydrophobicity and swellability.