Analysis of Modified Nucleotide Aptamer Library Generated by Thermophilic DNA Polymerases

One of the pivotal steps in aptamer selection is the amplification of target-specific oligonucleotides by thermophilic DNA polymerases; it can be a challenging task if nucleic acids possessing modified nucleotides are to be amplified. Hence, the identification of compatible DNA polymerase and modified nucleotide pairs is necessary for effective selection of aptamers with unnatural nucleotides. We present an in-depth study of using 5-indolyl-AA-dUTP (TAdUTP) to generate oligonucleotide libraries for aptamer selection. We found that, among the eight studied DNA polymerases, only Vent(exo-) and KOD XL are capable of adapting TAdUTP, and that replacing dTTP did not have a significant effect on the productivity of KOD XL. We demonstrated that water-in-oil emulsion PCR is suitable for the generation of aptamer libraries of modified nucleotides. Finally, high-throughput sequence analysis showed that neither the error rate nor the PCR bias was significantly affected by using TAdUTP. In summary, we propose that KOD XL and TAdUTP could be effectively used for aptamer selection without distorting the sequence space of random oligonucleotide libraries.     

Two-step purification strategy for enhanced recovery of recombinant hepatitis B surface antigen from Pichia pastoris

Univariate screening on factors affecting the purification performance of recombinant hepatitis B surface antigen (HBsAg) on ion exchange chromatography (IEC) and size exclusion chromatography (SEC) and the establishment of a two-step purification strategy were performed. Amongst four IEC adsorbents examined, the use of Q Sepharose XL IEC adsorbent under optimized conditions together with optimized SEC purification was able to efficiently purify HBsAg. An established purification strategy comprising the two techniques further demonstrated adaptability for scale-up operations with a final total purification factor (PF) of 94.82 ± 16.20, HBsAg purity of 95.48% and recovery yield of 78.07%.     

Heat transfer and fluid flow of nanofluids in laminar radial flow cooling systems

Nanofluids are considered as interesting alternatives to conventional coolants. It is well known that traditional fluids have limited heat transfer capabilities when compared to common metals. It is therefore quite conceivable that a small amount of extremely fine metallic particles placed in suspension in traditional fluids will considerably increase their heat transfer performances. A numerical investigation into the heat transfer enhancement capabilities of coolants with suspended metallic nanoparticles inside a radial, laminar flow cooling configuration is presented. Temperature dependant nanofluid properties are evaluated from experimental data available in recent literature. Results indicate that considerable heat transfer increases are possible with the use of relatively small volume fractions of nanoparticles. Generally, however, these are accompanied by considerable increases in wall shear-stress. Results also show that predictions obtained with temperature variable nanofluid properties yield greater heat transfer capabilities and lower wall shear stresses when compared to predictions using constant properties.     

Pre-treatment of kraft pulp bleach plant effluent by selected ultrafiltration membranes

Three ultrafiltration membranes in series with molar mass cutoffs of 130,000, 15,000, and 5,000 Da, respectively were used to pretreat Kraft pulp bleach plant effluent prior to biological treatment. The TOC (total organic carbon), COD (chemical oxygen demand) and AOX (adsorbable organic halogen) reductions for the permeate were 65, 70 and 85%, respectively with no significant change of toxicity. Treatment of the ultrafiltration permeate using tighter ultrafiltration (UF) and nanofiltration (NF) membranes with molar mass cutoffs less than 1,500 Da, yielded TOC and AOX reductions of 90 and 99%, respectively with a permeate Microtox EC₅₀ level of 100%.     

Nitrogen use efficiency by maize as affected by a mucuna short fallow and P application in the coastal savanna of West Africa

Maize is the primary food crop grown by farmers in the coastal savanna region of Togo and Benin on degraded (rhodic ferralsols), low in soil K-supplying capacity, and non-degraded (plinthic acrisols) soils. Agronomic trials were conducted during 1999–2002 in southern Togo on both soil types to investigate the impact of N and P fertilization and the introduction of a mucuna short fallow (MSF) on yield, indigenous N supply of the soil, N recovery fraction and internal efficiency of maize. In all plots, an annual basal dose of 100 kg K ha^–1 was applied to the maize crop. Maize and mucuna crop residues were incorporated into the soil during land preparation. Treatment yields were primarily below 80% of CERES-MAIZE simulated weather-defined maize yield potentials, indicating that nutrients were more limiting than weather conditions. On degraded soil (DS), maize yields increased from 0.4 t ha^–1 to 2.8 t ha^–1 from 1999 to 2001, without N or P application, in the absence of MSF, with annual K application and incorporation of maize crop residues. Application of N and P mineral fertilizer resulted in yield gains of 1–1.5 t ha^–1. With MSF, additional yield gains of between 0.5 and 1.0 t ha^–1 were obtained at low N application rates. N supply of the soil increased from 10 to 42 kg ha^–1 from 1999 to 2001 and to 58 kg N ha^–1 with MSF. Application of P resulted in significant improvements in N recovery fraction, and greatest gains were obtained with MSF and P application. MSF did not significantly affect internal N efficiency, which averaged 45 kg grain (kg N uptake)^–1. On non-degraded soils (NDS) and without N or P application, in the absence of MSF, maize yields were about 3 t ha^–1 from 1999 to 2001, with N supply of the soil ranging from 55 to 110 kg N ha^–1. Application of 40 kg P ha^–1 alone resulted in significant maize yield gains of between 1.0 (1999) and 1.5 (2001) t ha^–1. Inclusion of MSF did not significantly improve maize yields and even reduced N recovery fraction as determined in the third cropping year (2001). Results illustrate the importance of site-specific integrated soil fertility management recommendations for the southern regions of Togo and Benin that consider indigenous soil nutrient-supplying capacity and yield potential. On DS, the main nutrients limiting maize growth were N and probably K. On NDS, nutrients limiting growth were mainly N and P. Even on DS rapid gains in productivity can be obtained, with MSF serving as a means to allow farmers with limited financial means to restore the fertility of such soils. MSF cannot be recommended on relatively fertile NDS.     

Low energy electron storage ring with tunable compaction factor

A low energy electron storage ring is designed to have many desirable properties, such as varying momentum compaction factor, damping partition numbers, favorable betatron tunes for multiturn accumulations, and excellent dynamic aperture. This storage ring can be used for debunching rf linac beams in one turn, for compression of linac pulses, and more importantly for a compact photon source based on inverse Compton scattering of laser beams.     

New temperature dependent thermal conductivity data for water-based nanofluids

This paper presents effective thermal conductivity measurements of alumina/water and copper oxide/water nanofluids. The effects of particle volume fraction, temperature and particle size were investigated. Readings at ambient temperature as well as over a relatively large temperature range were made for various particle volume fractions up to 9%. Results clearly show the predicted overall effect of an increase in the effective thermal conductivity with an increase in particle volume fraction and with a decrease in particle size. Furthermore, the relative increase in thermal conductivity was found to be more important at higher temperatures. Obtained results compare favorably with certain data sets and theoretical models found in current literature.     

Factors affecting clients' project dispute resolution satisfaction in Hong Kong

The use of project dispute resolution satisfaction (DRS) as a project success measurement responds to the increasing concern over the spread of the dispute epidemic within the construction industry in Hong Kong. The DRS of a project is considered as favourable where disputes are resolved within the site level. With the use of 48 project data sets and the technique of multivariate discriminant analysis, a discriminant model function was derived to classify projects into favourable DRS and adverse DRS. The multivariate discriminant analysis model function identified eight discriminating variables, among which the degree of design changes offered the highest separation power. The reliability of the discrminating variables was reinforced by a separate relative importance index study. Through the use of principal component factor analysis, these variables were grouped into three factors generically described as substantive influence, facilitation and indirect influence.     

Defect-Related Physical-Profile-Based X-Ray and Neutron Line Profile Analysis

Diffraction line broadening is caused by different defects present in crystalline materials: (1) small coherent domains, (2) dislocations, (3) other types of microstrains, (4) twin boundaries, (5) stacking faults, (6) chemical inhomogeneities, and (7) grain-to-grain second-order internal stresses. Line profile analysis provides qualitative and quantitative information about defect types and densities, respectively. Line profiles can broaden, be asymmetric, and be shifted, and these features can be anisotropic in terms of hkl indices. A few thumb rules help qualitative selection of lattice defect types. If the breadths do not increase globally with hkl, the defects are of size type, i.e., either the domain size is small or twinning or faulting, or both, is present. Whenever the breadths increase globally, the defects produce microstrains. Physically based profile functions can be determined for the different defect types and hkl anisotropy. The qualitative input about defect types based on different experimental observations allows adequate quantitative evaluation of the densities of different defect types by using physically modeled profile functions.