Analysis of the human immune response to vaccinia by use of a novel protein microarray suggests that antibodies recognize less than 10% of the total viral proteome

Control of smallpox by mass vaccination was one of the most effective public health measures ever employed for eradicating a devastating infectious disease. However, new methods are needed for monitoring smallpox immunity within current vulnerable populations, and for the development of replacement vaccines for use by immunocompromized or low-responding individuals. As a measure for achieving this goal, we developed a protein microarray of the vaccinia virus proteome by using high-throughput baculovirus expression and purification of individual elements. The array was validated with therapeutic-grade, human hyperimmune sera, and these data were compared to results obtained from individuals vaccinated against smallpox using Dryvax. A high level of reproducibility with a very low background were apparent in repetitive assays that confirmed previously reported antigens and identified new proteins that may be important for neutralizing viral infection. Our results suggest that proteins recognized by antibodies from all vaccinees constituted <10% of the total vaccinia proteome.     

Personality and substance dependence symptoms: Modeling substance-specific traits.

Personality traits related to neuroticism and disinhibition have been consistently associated with substance use disorders (SUDs). It is unclear, however, whether different personality traits predict distinct forms of substance dependence. Additionally, it is unclear whether personality traits continue to predict alcohol, drug, and tobacco dependence after controlling for comorbid antisociality and other SUDs. The current study addresses these questions by characterizing relations between personality traits and substance dependence symptoms in a longitudinal sample of 3,720 college students. Results revealed that antisociality and certain core personality traits predicted multiple types of substance pathology. In addition, several personality traits were differentially associated with alcohol, drug, and tobacco symptomatology. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Hydrothermal catalytic production of fuels and chemicals from aquatic biomass

One of the promising avenues for biomass processing is the use of water as a reaction medium for wet or aquatic biomass. This review focuses on the hydrothermal catalytic production of fuels and chemicals from aquatic biomass. Two different regimes for conversion of aquatic biomass in hydrothermal conditions are discussed in detail. The first is hydrothermal liquefaction, and the second is hydrothermal gasification. The goals of these processes are to produce liquid‐fuel‐range hydrocarbons and methane or hydrogen, respectively. The catalytic upgrading of biocrude resulting from noncatalytic liquefaction and the stability and degradation of catalysts in high temperature water are also discussed. The review concludes with a brief discussion of the outlook for and opportunities within the field of hydrothermal catalytic valorization of biomass. Copyright © 2012 Society of Chemical Industry     

Plasmonic and photonic scattering and near fields of nanoparticles

We theoretically compare the scattering and near field of nanoparticles from different types of materials, each characterized by specific optical properties that determine the interaction with light: metals with their free charge carriers giving rise to plasmon resonances, dielectrics showing zero absorption in wide wavelength ranges, and semiconductors combining the two beforehand mentioned properties plus a band gap. Our simulations are based on Mie theory and on full 3D calculations of Maxwell’s equations with the finite element method. Scattering and absorption cross sections, their division into the different order electric and magnetic modes, electromagnetic near field distributions around the nanoparticles at various wavelengths as well as angular distributions of the scattered light were investigated. The combined information from these calculations will give guidelines for choosing adequate nanoparticles when aiming at certain scattering properties. With a special focus on the integration into thin film solar cells, we will evaluate our results.     

Pyrolysis of model compounds on spent oil shales, minerals and charcoal: Implications for shale oil composition

Aliphatic compounds (alkanes, alkenes, alkanoic acids, ketones, alcohols and amines) were passed through beds of spent oil shales (Condor brown, Condor carbonaceous, Julia Creek), minerals (quartz, calcite, K-feldspar, pyrite, kaolinite) and charcoal at temperatures of 300–600 °C and the products were analysed by g.c.m.s. All the materials catalysed isomerization, aromatization and cracking to varying degrees: non-clay minerals < kaolinite ≈ spent oil shales < charcoal. Products included branched alkanes, isomeric alkenes, nitriles, ketones and alkyl-substituted benzenes, naphthalenes, pyridines, phenols, thiophenes and pyrroles. These compounds occur in shale oils and may be derived from secondary reactions of aliphatic products arising from kerogen cracking.     

Designing block copolymer architectures for targeted membrane performance

Using a combination of block copolymer self-assembly and non-solvent induced phase separation, isoporous ultrafiltration membranes were fabricated from four poly(isoprene-b-styrene-b-4-vinylpyridine) triblock terpolymers with similar block volume fractions but varying in total molar mass from 43 kg/mol to 115 kg/mol to systematically study the effect of polymer size on membrane structure. Small-angle X-ray scattering was used to probe terpolymer solution structure in the dope. All four triblocks displayed solution scattering patterns consistent with a body-centered cubic morphology. After membrane formation, structures were characterized using a combination of scanning electron microscopy and filtration performance tests. Membrane pore densities that ranged from 4.53 × 10¹⁴ to 1.48 × 10¹⁵ pores/m² were observed, which are the highest pore densities yet reported for membranes using self-assembly and non-solvent induced phase separation. Hydraulic permeabilities ranging from 24 to 850 L m⁻² h⁻¹ bar⁻¹ and pore diameters ranging from 7 to 36 nm were determined from permeation and rejection experiments. Both the hydraulic permeability and pore size increased with increasing molar mass of the parent terpolymer. The combination of polymer characterization and membrane transport tests described here demonstrates the ability to rationally design macromolecular structures to target specific performance characteristics in block copolymer derived ultrafiltration membranes.     

Quantification of two decades of shallow-water coral reef habitat decline in the Florida Keys National Marine Sanctuary using Landsat data (1984–2002)

The loss of coral reef habitats has been witnessed at a global scale including in the Florida Keys and the Caribbean. In addition to field surveys that can be spatially limited, remote sensing can provide a synoptic view of the changes occurring on coral reef habitats. Here, we utilize an 18-year time series of Landsat 5/TM and 7/ETM+ images to assess changes in eight coral reef sites in the Florida Keys National Marine Sanctuary, namely Carysfort Reef, Grecian Rocks, Molasses Reef, Conch Reef, Sombrero Reef, Looe Key Reef, Western Sambo and Sand Key Reef. Twenty-eight Landsat images (1984–2002) were used, with imagery gathered every 2 years during spring, and every 6 years during fall. The image dataset was georectified, calibrated to remote sensing reflectance and corrected for atmospheric and water-column effects. A Mahalanobis distance classification was trained for four habitat classes (‘coral’, ‘sand’, ‘bare hardbottom’ and ‘covered hardbottom’) using in situ ground-truthing data collected in 2003–2004 and using the spectral statistics from a 2002 image. The red band was considered useful only for benthic habitats in depths less than 6 m. Overall mean coral habitat loss for all sites classified by Landsat was 61% (3.4%/year), from a percentage habitat cover of 19% (1984) down to 7.6% (2002). The classification results for the eight different sites were critically reviewed. A detailed pixel by pixel examination of the spatial patterns across time suggests that the results range from ecologically plausible to unreliable due to spatial inconsistencies and/or improbable ecological successions. In situ monitoring data acquired by the Coral Reef Evaluation and Monitoring Project (CREMP) for the eight reef sites between 1996 and 2002 showed a loss in coral cover of 52% (8.7%/year), whereas the Landsat-derived coral habitat areas decreased by 37% (6.2%/year). A direct trend comparison between the entire CREMP percent coral cover data set (1996–2004) and the entire Landsat-derived coral habitat areas showed no significant difference between the two time series (ANCOVA; F-test, p = 0.303, n = 32), despite the different scales of measurements.     

Reasoning about necessity and possibility: A test of the mental model theory of deduction.

This article examined syllogistic reasoning in college students that differs from previous research in 2 significant ways: (a) Participants were asked to decide whether conclusions were possible as well as necessary, and (b) every possible combination of syllogistic premises and conclusions was presented for evaluation with both single-premise (Experiment 1) and double-premise (Experiment 2) problems. Participants more frequently endorsed conclusions as possible than as necessary, and differences in response to the 2 forms of instruction conformed to several predictions derived from the mental model theory of deduction. Findings of Experiments 2 and 3 showed that some fallacies are consistently endorsed and others consistently resisted when people are asked to judge whether conclusions that are only possible follow necessarily. This finding was accounted for by the computational implementation of the model theory: Fallacies are made when the first mental model of the premises considered supports the conclusion presented. (PsycINFO Database Record (c) 2010 APA, all rights reserved)