Primary structure of gene H of cattle plague virus strain K]

The paper analyzes the standard legal and methodological assurance of the quality and safety of animal food raw materials and foodstuffs (meat, meat products, fish, shellfish, crayfish and their processing products) by the parasitic purity rates according the requirements under the Russian Federation's laws "On Sanitary and Epidemiological Well-Being of the Population", "On Protection of Consumer's Rights", "On Certification of Products and Services", those of SanPiN, such as 2.3.2.560-96 "Sanitary Requirements for the Quality and Safety of Food Raw Materials and Foodstuffs" and 3.2.569-96 "Prevention of Parasitic Diseases in the Russian Federation".     

Homology and functional similarity of an hrp-linked pathogenicity locus, dspEF, of Erwinia amylovora and the avirulence locus avrE of Pseudomonas syringae pathovar tomato

The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. A 6.6-kb apparent operon, dspEF, was found responsible for this phenotype. The operon contains genes dspE and dspF and is positively regulated by hrpL. A BLAST search revealed similarity in the dspE gene to a partial sequence of the avrE locus of Pseudomonas syringae pathovar tomato. The entire avrE locus was sequenced. Homologs of dspE and dspF were found in juxtaposed operons and were designated avrE and avrF. Introduced on a plasmid, the dspEF locus rendered P. syringae pv. glycinea race 4 avirulent on soybean. An E. amylovora dspE mutant, however, elicited a hypersensitive reaction in soybean. The avrE locus in trans restored pathogenicity to dspE strains of E. amylovora, although restored strains were low in virulence. DspE and AvrE are large (198 kDa and 195 kDa) and hydrophilic. DspF and AvrF are small (16 kDa and 14 kDa) and acidic with predicted amphipathic alpha helices in their C termini; they resemble chaperones for virulence factors secreted by type III secretion systems of animal pathogens.     

Sulphur dioxide loadings over megacity Lahore (Pakistan) and adjoining region of Indo-Gangetic Basin

This article presents spatial and temporal variations of planetary boundary layer (PBL) sulphur dioxide (SO₂) over megacity Lahore and adjoining region, a typical representative area in the Indo-Gangetic Basin (IGB) largely influenced by transported volcanic SO₂ from Africa, Middle East, and southern Europe, by using data retrieved from satellite-based Ozone Monitoring Instrument (OMI) during October 2004–September 2015. We find a positive trend of 2.4% per year (slope 0.01 ± 0.005 with y-intercept 0.35 ± 0.03 Dobson Unit (DU), correlation coefficient r = 0.55 and 2-tailed p-value at 0.1) of OMI-SO₂ column with the average value of 0.4 ± 0.05 DU. Strong seasonality of OMI-SO₂ column is observed over the region linked with local meteorology, patterns of anthropogenic emissions, crop residue burning, and vegetation cover. There exists a seasonal high value in winter 0.56 ± 0.24 DU with a peak in December 0.67 ± 0.26 DU. The seasonal lowest value is observed to be 0.29 ± 0.11 DU in wet summer with minimum value in July 0.25 ± 0.06 DU. High growth rates of OMI-SO₂ column over the study region have been observed in January, June, October, and December ranging from 5.7% to 11.6% per year. Satellite data show elevated OMI-SO₂ columns in 2007, 2008, 2011, and 2012 largely contributed by trans-boundary volcanic SO₂. A detailed analysis of volcanic SO₂ transported from Africa and Middle East (Jabal Al-Tair, Dalaffilla, and Nabro volcanoes) over the study area is presented. Air mass trajectories suggest the presence of long-range transported volcanic SO₂ at high altitude levels over Lahore and IGB region during the volcanic episodes. The SO₂ enhancements in PBL during winter season are generally due to significant vertical downdraft of high-altitude volcanic SO₂. For the first time, we present significant influence of volcanic SO₂ from southern Europe (Mt. Etna volcano) reaching over the study area. Daily mean OMI-SO₂ levels up to 21.4, 10.0, 5.6, and 2.4 DU have been noticed due to the eruptions from Dalaffilla, Mt. Etna, Nabro, and Jabal Al-Tair volcanoes, respectively.     

Performance evaluation of semantic registries: OWLJessKB and instanceStore

Service discovery is a critical task in distributed computing architectures for finding a particular service instance. Semantic annotations of services help to enrich the service discovery process. Semantic registries are an important component for the discovery of services and they allow for semantic interoperability through ontology-based query formulation and dynamic mapping of terminologies between system domains. This paper evaluates two semantic registries—OWLJessKB implementation and instanceStore—to determine the suitability of these with regards to the query response time and the overall scalability for use in mathematical services. Mathematical ontologies from the MONET project are used to undertake comparison. The results demonstrate that the performance of registries may be compared across two axes: (1) time to initialize (i.e. time to load an initial ontology into memory); (2) time to query (i.e. time to reason with an ontology loaded into memory).     

Generalized Lévy-walk model for DNA nucleotide sequences

We propose a generalized Lévy walk to model fractal landscapes observed in noncoding DNA sequences. We find that this model provides a very close approximation to the empirical data and explains a number of statistical properties of genomic DNA sequences such as the distribution of strand-biased regions (those with an excess of one type of nucleotide) as well as local changes in the slope of the correlation exponent alpha. The generalized Lévy-walk model simultaneously accounts for the long-range correlations in noncoding DNA sequences and for the apparently paradoxical finding of long subregions of biased random walks (length lj) within these correlated sequences. In the generalized Lévy-walk model, the lj are chosen from a power-law distribution P(lj) varies as lj(-mu). The correlation exponent alpha is related to mu through alpha = 2-mu/2 if 2 < mu < 3. The model is consistent with the finding of "repetitive elements" of variable length interspersed within noncoding DNA.     

Three Dimensional Conceptualisation of Hydrogeological Environment to Underpin Groundwater Management in Irrigation Area

Australian irrigated agriculture utilises about 70?% of all water used in the country, 21?% of which is derived from groundwater. Sustainability for irrigated agriculture also depends on keeping the watertables at a safe level below the rootzone to avoid salinisation and reduction in crop yields. There is a vital need to understand groundwater and aquifer systems and their roles in the sustainability of irrigated agriculture in order to manage groundwater properly. This study builds on the previous hydrogeological and groundwater investigations of the Coleambally Irrigation Area (CIA) in New South Wales of Australia. It presents a new approach which systematically characterises regional hydrogeological environment using a three-dimensional (3-D) conceptual framework developed in ArcGIS. The 3-D hydrological conceptualisation of the CIA has integrated disparate sources of data into a coherent knowledge base for a better visualisation of hydrogeological characteristics and a comprehensive analysis of groundwater flow and aquifers. As an application example, the model was used to develop cross-sectional models of the area and to estimate regional-scale net recharge. The results have provided a basis for the numerical modelling and added values to procedures which underpin irrigation system management investment decisions through improving the understanding of hydrogeology underlying the area and creating an action-oriented dialogue among stakeholders.     

Analysis of temporal jitter in a copper vapor laser system

Temporal jitter in a magnetic pulse compression based copper vapor laser (CVL) system is analyzed by considering ripple present in the input dc power supply and ripple present in the magnetic core resetting power supply. It is shown that the jitter is a function of the ratio of operating voltage to the designed voltage, percentage ripple, and the total propagation delay of the magnetic pulse compression circuit. Experimental results from a CVL system operating at a repetition rate of 9 kHz are presented.     

Effect of powder treatment on the crystallization behaviour and phase evolution of Al2O3–High ZrO2 nanocomposites

Al₂O₃–ZrO₂ composites containing nominally equal volume fraction of Al₂O₃ and ZrO₂ have been synthesized through combined gel-precipitation technique. Subsequently the gels were subjected to three different post gel processing treatments like ultrasonication, ultrasonication followed by water washing and ultrasonication followed by alcohol washing. It was observed that while in unwashed samples crystallization took place at low temperature, crystallization was delayed in the washed gels. The phase transition of ZrO₂ in the calcined gels followed the sequence; amorphous → cubic ZrO₂ → tetragonal ZrO₂ → monoclinic ZrO₂. On the other hand, phase transition in alumina followed the sequence amorphous to γ-Al₂O₃, the transition taking place at 650 °C. No α-Al₂O₃ could be detected even after calcination at 950 °C. However, all the sintered samples had α-Al₂O₃. In spite of high linear shrinkage (19–21%) during sintering, the sintered sample had density of only above 70% for all the four varieties of the powders. However, in spite of the low sintered density of the pellets, 31% tetragonal zirconia could be retained after sintering at 1400 °C and it reduced to about 16% at 1600 °C.     

GnRH signalling pathways and GnRH-induced homologous desensitization in a gonadotrope cell line (alphaT3-1)

Exposure of the gonadotrope cells to gonadotropin-releasing hormone (GnRH) reduces their responsiveness to a new GnRH stimulation (homologous desensitization). The time frame as well as the mechanisms underlying this phenomenon are yet unclear. We studied in a gonadotrope cell line (alphaT3-1) the effects of short as well as long term GnRH pretreatments on the GnRH-induced phospholipases-C (PLC), -A2 (PLA2) and -D (PLD) activities, by measuring the production of IP3, total inositol phosphates (IPs), arachidonic acid (AA) and phosphatidylethanol (PEt) respectively. We demonstrated that although rapid desensitization of GnRH-induced IP3 formation did not occur in these cells, persistent stimulation of cells with GnRH or its analogue resulted in a time-dependent attenuation of GnRH-elicited IPs formation. GnRH-induced IPs desensitization was potentiated after direct activation of PKC by the phorbol ester TPA, suggesting the involvement of distinct mechanisms in the uncoupling exerted by either GnRH or TPA on GnRH-stimulated PI hydrolysis. The levels of individual phosphoinositides remained unchanged under any desensitization condition applied. Interestingly, while the GnRH-induced PLA2 activity was rapidly desensitized (2.5 min) after GnRH pretreatments, the neuropeptide-evoked PLD activation was affected at later times, indicating an important time-dependent contribution of these enzymatic activities in the sequential events underlying the GnRH-induced homologous desensitization processes in the gonadotropes. Under GnRH desensitization conditions, TPA was still able to induce PLD activation and to further potentiate the GnRH-evoked PLD activity. AlphaT3-1 cells possess several PKC isoforms which, except PKCzeta, were differentially down-regulated by TPA (PKCalpha, betaII, delta, epsilon, eta) or GnRH (PKCbetaII, delta, epsilon, eta). In spite of the presence of PKC inhibitors or down-regulation of PKC isoforms by TPA, the desensitizing effect of the neuropeptide on GnRH-induced IPs, AA and PEt formation remained unchanged. In conclusion, in alphaT3-1 cells the GnRH-induced homologous desensitization affects the GnRH coupling with PLC, PLA2 and PLD by mechanism(s) which do not implicate TPA-sensitive PKC isoforms, but likely reflect time-dependent modification(s) on the activation processes of the enzymes.