A model agreement for genetic research in socially identifiable populations

Genetic research increasingly focuses on population-specific human genetic diversity. However, the naming of a human population in public databases and scientific publications entails collective risks for its members. Those collective risks can be evaluated and protections can be put in place by the establishment of a dialogue with the subject population, before a research study is initiated. Here we describe an agreement to undertake genetic research with a Native American tribe. We identified the culturally appropriate public and private social units within which community members are accustomed to make decisions about health. We then engaged those units in a process of communal discourse. In their discourses about our proposed study, community members expressed most concern about culturally specific implications. We also found that, in this population, private social units were more influential in communal decision making than were public authorities. An agreement was reached that defined the scope of research, provided options for naming the population in publications (including anonymity), and addressed the distribution of royalties from intellectual property, the future use of archival samples, and specific cultural concerns. We found that informed consent by individuals could not fully address these collective issues. This approach may serve as a general model for the undertaking of population-specific genetic studies.     

Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export

The DBP5 gene encodes a putative RNA helicase of unknown function in the yeast Saccharomyces cerevisiae. It is shown here that Dbp5p is an ATP-dependent RNA helicase required for polyadenylated [poly(A)+] RNA export. Surprisingly, Dbp5p is present predominantly, if not exclusively, in the cytoplasm, and is highly enriched around the nuclear envelope. This observation raises the possibility that Dbp5p may play a role in unloading or remodeling messenger RNA particles (mRNPs) upon arrival in the cytoplasm and in coupling mRNP export and translation. The functions of Dbp5p are likely to be conserved, since its potential homologues can be found in a variety of eukaryotic cells.     

Penicillin vs. erythromycin in the treatment of diphtheria

PURPOSE: To review the University of Florida experience in treating ependymomas, analyze prognostic factors, and provide treatment recommendations. METHODS AND MATERIALS: Forty-one patients with ependymoma and no metastases outside the central nervous system received postoperative radiotherapy with curative intent between 1966 and 1989. Ten patients had supratentorial lesions, 22 had infratentorial lesions, and 9 had spinal cord lesions. All patients had surgery (stereotactic biopsy, subtotal resection, or gross total resection). Most patients with high-grade lesions received radiotherapy to the craniospinal axis. Low-grade intracranial lesions received more limited treatment. Spinal cord lesions were treated using either partial spine or whole spine fields. RESULTS: Of 32 intracranial tumors, 21 recurred, all at the primary site; no spinal cord tumors recurred. Overall 10-year survival rates were 51% (absolute) and 46% (relapse-free); by tumor site: spinal cord, 100%; infratentorial, 45%; supratentorial, 20% (p = 0.002). On multivariate analysis, tumor site was the only factor that influenced absolute survival (p = 0.0004); other factors evaluated included grade, gender, age, duration of symptoms, resection extent, primary tumor dose, treatment field extent, surgery-to-radiotherapy interval, and days under radiotherapy treatment. CONCLUSIONS: Patients with supratentorial or infratentorial tumors receive irradiation, regardless of grade. Craniospinal-axis fields are used when spinal seeding is radiographically or pathologically evident. Spinal cord tumors are treated using localized fields to the primary site if not completely resected. Failure to control disease at the primary site remains the main impediment to cure.     

Differential expression and distribution of focal adhesion and cell adhesion molecules in rat hepatocyte differentiation

The present study has examined the distribution of axons of differing sizes in the optic pathway of the ground squirrel. Axon diameters were measured from electron micrographs at various locations across sections of the optic nerve and tract, and total distributions and numbers were estimated. In both the nerve and tract, roughly 1.2 million optic axons were present. The population of optic axons had a unimodal size distribution, peaking at 0.9 microm in diameter and having an extended tail toward larger diameters. Local axon diameter distributions in the optic tract indicated distinct (though partially overlapping) axon diameter classes, including one of fine sizes peaking at 0.8-0.9 microm, a second of medium sizes peaking around 1.7-1.8 microm, and a third composed of the larger fibers with diameters up to 4.8 microm. The fine-caliber axons were found at all locations in the tract, and were the only axons present immediately adjacent to the pia, while the medium- and coarse-caliber axons were found at deeper locations. Curiously, the larger axons were found primarily in the medial parts of the tract, where axons from the dorsal retina normally course. A similarly restricted distribution of the larger axons was observed in the dorsotemporal parts of the optic nerve, suggesting that this difference in the tract may relate to an asymmetric distribution of ganglion cells on the retina giving rise to these axons. Measurements of axonal size taken within the optic fiber layer in dorsal and ventral parts of the retina confirmed this asymmetry, consistent with previous demonstrations of soma size differences in the dorsal versus ventral retina. The partial segregation of axons by size in the optic tract of the ground squirrel then reflects both the asymmetric distribution of retinal ganglion cell classes and the chronotopic reordering of optic axons that occurs within the chiasmatic region.     

Small blaze angle gratings with various surface treatments for use in the extreme ultraviolet

Three replica gratings were made from a single master; two were epoxy overcoated with different thicknesses of gold, and one was replicated directly in gold. Their performance in EUV light at grazing incidence angles was measured and compared.     

Optimization of decision rules for hydroelectric operation to reduce both eel mortality and unnecessary turbine shutdown: A search for a win–win solution

Worldwide populations of freshwater eels have declined with one of the contributing causes related to mortality during passage through hydropower turbines. An inherent trade‐off underlies turbine management where the competing demand for more hydropower comes at the expense of eel survival. A win–win solution exists when an option performs better on all competing demands compared to other options. A predictive model for eel migration based on a recent telemetry study was used to develop decision rules for turbine management in the Shenandoah River system. The performance of alternative decision rules was compared to the status quo policy to search for win–win solutions. Decision rules were defined by the probability of eel movement and were evaluated by the probabilities of false positive and false negative errors. The exact value of the cut‐off probability used in the decision rule will need to be determined through negotiation between stakeholders, but a range of cut‐off probabilities resulted in a win–win situation with both reduced eel mortality and increased turbine operation relative to the current shutdown strategy. Monitoring the implementation is needed to evaluate and update the predictive model and to refine the decision rule. Although the decision is framed for the Shenandoah River system, the analytical approach could be used to develop decision rules for turbine shutdown policy in other areas.     

Experimental habitat scenting inhibits colonization by beaver,Castor canadensis

Unoccupied beaver (Castor canadensis) sites in New York State were for two years experimentally scented with a mixture of beaver castoreum and anal gland secretion. These sites were colonized less often than unscented control sites. The beaver is the first mammal to have been shown experimentally to use intraspecific odor cues when settling in vacant habitat. Territorial pheromones may be useful as repellents for beaver or other rodents.     

蜕变测试和断言检查的比较与实验研究

在软件测试中,测试预言是一种用于检查程序在测试中是否正常运行的机制.然而在某些实际情况下,还无法制定测试预言或者难以有效地应用测试预言.针对此类测试预言问题,蜕变测试于近年应运而生,但蜕变测试的效率问题还没有被充分地加以研究.作者用控制实验的方法研究了使用蜕变测试的成本及效率,进而将蜕变测试和常用的断言检查两种方法的错误检测率和时间成本进行了比较和分析.实验结果表明,相比于断言检查方法,蜕变测试具有检测到更多错误的潜力.通过分析蜕变测试的效率和性能,与断言测试相比,蜕变测试的错误检测率更高效而效率有待提高,可适用于较为粗粒度的测试需求.     

Signal-to-noise ratio for astronomical imaging by deconvolution from wave-front sensing

One method for improving the quality of astronomical images measured through a atmospheric turbulence uses simultaneous short-exposure measurements of both an image and the output of a wave-front sensor exposed to an image of the telescope pupil. The wave-front sensor measurements are used to reconstruct an estimate of the instantaneous generalized pupil function of the telescope, which is used to compute an estimate of the instantaneous optical transfer function, which is then used in a deconvolution procedure. This imaging method has been called both deconvolution from wave-front sensor (DWFS) measurements and self-referenced speckle holography. We analyze the signal-to-noise ratio (SNR) behavior of this imaging method in the spatial frequency domain. The analysis includes effects arising from differences in the correlation properties of the incident and the estimated pupil phases and the fact that the object-spectrum estimator is a randomly filtered doubly stochastic Poisson random process. SNR resultsobtained for the DWFS method are compared with the speckle-imaging powerspectrum SNR for equivalent seeing conditions and light levels. It is shown that for unresolved stars the power-spectrum SNR is superior to the DWFS SNR. However, for extended objects the power-spectrum SNR and the DWFS SNR are similar. Since speckle imaging uses a separate Fourier phasereconstruction process not required by the DWFS method, the DWFS method provides an alternative to speckle imaging that uses simple postprocessing at the cost of a wave-front sensor measurement but with no loss of SNR performance for extended objects.