Visualization and calculation of polarized light. I. The polarization ellipse, the Poincaré sphere and the hybrid polarization sphere

We describe the historical and mathematical development of the polarization ellipse and the Poincaré sphere. We point out the limitations of the Poincaré sphere in its present use. To overcome these limitations we describe a new polarization sphere that we call the hybrid polarization sphere. This name is used because phase shifting and rotation of polarization components are described by small circles. Furthermore, longitudinal and latitudinal great circles are introduced so that the coordinates of a point on the sphere can be read. The hybrid polarization sphere is described and applied to polarizers, wave plates, and rotators. As a result, the hybrid polarization sphere can be used for both visualization and calculation and enables the difficulties associated with the Poincaré sphere to be overcome.     

Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma

The development and progression of cancer is associated with disruption of biological networks. Historically studies have identified sets of signature genes involved in events ultimately leading to the development of cancer. Identification of such sets does not indicate which biologic processes are oncogenic drivers and makes it difficult to identify key networks to target for interventions. Using a comprehensive, integrated computational approach, the authors identify the sonic hedgehog (SHH) pathway as the gene network that most significantly distinguishes tumour and tumour‐adjacent samples in human hepatocellular carcinoma (HCC). The analysis reveals that the SHH pathway is commonly activated in the tumour samples and its activity most significantly differentiates tumour from the non‐tumour samples. The authors experimentally validate these in silico findings in the same biologic material using Western blot analysis. This analysis reveals that the expression levels of SHH, phosphorylated cyclin B1, and CDK7 levels are much higher in most tumour tissues as compared to normal tissue. It is also shown that siRNA‐mediated silencing of SHH gene expression resulted in a significant reduction of cell proliferation in a liver cancer cell line, SNU449 indicating that SHH plays a major role in promoting cell proliferation in liver cancer. The SHH pathway is a key network underpinning HCC aetiology which may guide the development of interventions for this most common form of human liver cancer.Inspec keywords: bioinformatics, cancer, cellular biophysics, genetics, liver, molecular biophysics, RNA, systems analysis, tumoursOther keywords: biomedical informatics, human liver cancer, network underpinning HCC aetiology, liver cancer cell line, cell proliferation, SHH gene expression, siRNA‐mediated silencing, CDK7 levels, phosphorylated cyclin B1, Western blot analysis, in silico findings, SHH pathway, human hepatocellular carcinoma, tumour‐adjacent samples, gene network, integrated computational approach, oncogenic drivers, biologic processes, cancer development, biological networks, cancer progression, oncogenic target, primary biomarker, sonic hedgehog pathway, pathway interactions, systems analysis     

Combining electrodermal responses and cardiovascular measures for probing adaptive automation during simulated flight

Adaptive automation increases the operator's workload in case of hypovigilance and takes over more responsibility if workload becomes too high. Two consecutive studies were conducted to construct a biocybernetic adaptive system for a professional flight simulator, based on autonomic measures. Workload was varied through different stages of turbulences. In a first study with 18 participants, electrodermal responses of experimental subjects oscillated very close to the individual set point, demonstrating that workload level was adjusted as a result of adaptive control, which was not the case in yoked control subjects without adaptive automation. Combining electrodermal responses with heart rate variability in a second study with 48 participants further enhanced the adaptive power which was seen in even smaller set point deviations for the experimental compared to the yoked control group. We conclude that the level of arousal can be adjusted to avoid hypovigilance by combining autonomic measures in a closed loop.     

Structural constraints on the ternary complex of 5-enolpyruvylshikimate-3-phosphate synthase from rotational-echo double-resonance NMR

The 46 kDa enzyme 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase catalyzes the condensation of shikimate-3-phosphate (S3P) and phosphoenolpyruvate to form EPSP. The reaction is inhibited by N-(phosphonomethyl)-glycine (Glp), which in the presence of S3P, binds to EPSP synthase to form a stable ternary complex. As part of a solid-state NMR characterization of this structure, 15N labels were introduced selectively into the lysine, arginine and histidine residues of EPSP synthase and distances to a 13C label in Glp and to the 31P in S3P and Glp were measured by rotational-echo double-resonance NMR. Three lysine and four arginine residues are in the proximity of the phosphate group of S3P and the carboxyl and phosphonate groups of Glp. A single histidine residue is in the vicinity of the binding site (closer to Glp than to S3P) but is more distant than the lysine and arginine residues.     

Lovastatin decreases de novo cholesterol synthesis and LDL Apo B-100 production rates in combined-hyperlipidemic males

The effect of lovastatin, an inhibitor of 3-hydroxy-3-methylglutaryl coenzyme A reductase activity, on the kinetics of de novo cholesterol synthesis and apolipoprotein (apo) B in very-low-density lipoprotein (VLDL), intermediate-density lipoprotein (IDL), and low-density lipoprotein (LDL) was investigated in five male patients with combined hyperlipidemia. Subjects were counseled to follow a Step 2 diet and were treated with lovastatin and placebo in randomly assigned order for 6-week periods. At the end of each experimental period, subjects were given deuterium oxide orally and de novo cholesterol synthesis was assessed from deuterium incorporation into cholesterol and expressed as fractional synthesis rate (C-FSR) and production rate (C-PR). Simultaneously, the kinetics of VLDL, IDL, and LDL apo B-100 were studied in the fed state using a primed-constant infusion of deuterated leucine to measure fractional catabolic rates (FCR) and production rates (PR). Drug treatment resulted in significant decreases in total cholesterol (-29%), VLDL cholesterol (-40%), LDL cholesterol (-27%), and apo B (-16%) levels and increases in HDL cholesterol (+13%) and apolipoprotein (apo) A-I (+11%) levels. Associated with these plasma lipoprotein responses was a significant reduction in both de novo C-FSR (-40%; P = .04) and C-PR (-42%; P = .03). Treatment with lovastain in these patients had no significant effect on the FCR of apoB-100 in VLDL, IDL, or LDL, but resulted in a significant decrease in the PR of apoB-100 in IDL and LDL. Comparing the kinetic data of these patients with those of 10 normolipidemic control subjects indicates that lovastatin treatment normalized apoB-100 IDL and LDL PR. The results of these studies suggest that the declines in plasma lipid levels observed after treatment of combined hyperlipidemic patients with lovastatin are attributable to reductions in the C-FSR and C-PR of de novo cholesterol synthesis and the PR of apoB-100 containing lipoproteins. The decline in de novo cholesterol synthesis, rather than an increase in direct uptake of VLDL and IDL, may have contributed to the decline in the PR observed.     

The Stuttgart positron beam, its performance and recent experiments

A monoenergetic MeV positron (e⁺) beam, with a flux at present of 6 × 10⁴ e⁺/s in the energy range of 0.5 to 6.5 MeV, has been installed at the Stuttgart Pelletron accelerator. The stabilization and the absolute calibration of the energy E is monitored by a Ge detector with real-time feedback; a relative energy stability of ΔE/E 10⁻⁴ is obtained. So far, e⁺e⁻ scattering and annihilation-in-flight experiments for investigating the low-energy e⁺e⁻ interaction as well as β⁺ γ positron lifetime measurements in condensed matter have been performed. The advantages of the β⁺ γ method compared to the conventional γγ coincidence technique have been demonstrated. Recently, triple-coincidence positron “age-momentum correlation” measurements have been carried out on fused quartz. A brief account is given on the development of a “positron clock” aiming at a substantial improvement of the time resolution of the β⁺ γ positron lifetime measurements.