Xylose Fermentation by Saccharomyces cerevisiae: Challenges and Prospects

Many years have passed since the first genetically modified Saccharomyces cerevisiae strains capable of fermenting xylose were obtained with the promise of an environmentally sustainable solution for the conversion of the abundant lignocellulosic biomass to ethanol. Several challenges emerged from these first experiences, most of them related to solving redox imbalances, discovering new pathways for xylose utilization, modulation of the expression of genes of the non-oxidative pentose phosphate pathway, and reduction of xylitol formation. Strategies on evolutionary engineering were used to improve fermentation kinetics, but the resulting strains were still far from industrial application. Lignocellulosic hydrolysates proved to have different inhibitors derived from lignin and sugar degradation, along with significant amounts of acetic acid, intrinsically related with biomass deconstruction. This, associated with pH, temperature, high ethanol, and other stress fluctuations presented on large scale fermentations led the search for yeasts with more robust backgrounds, like industrial strains, as engineering targets. Some promising yeasts were obtained both from studies of stress tolerance genes and adaptation on hydrolysates. Since fermentation times on mixed-substrate hydrolysates were still not cost-effective, the more selective search for new or engineered sugar transporters for xylose are still the focus of many recent studies. These challenges, as well as under-appreciated process strategies, will be discussed in this review.     

CTHRSSVVC Peptide as a Possible Early Molecular Imaging Target for Atherosclerosis

The purpose of our work was to select phages displaying peptides capable of binding to vascular markers present in human atheroma, and validate their capacity to target the vascular markers in vitro and in low-density lipoprotein receptor knockout (LDLr^−/−) mouse model of atherosclerosis. By peptide fingerprinting on human atherosclerotic tissues, we selected and isolated four different peptides sequences, which bind to atherosclerotic lesions and share significant similarity to known human proteins with prominent roles in atherosclerosis. The CTHRSSVVC-phage peptide displayed the strongest reactivity with human carotid atherosclerotic lesions (p < 0.05), when compared to tissues from normal carotid arteries. This peptide sequence shares similarity to a sequence present in the fifth scavenger receptor cysteine-rich (SRCR) domain of CD163, which appeared to bind to CD163, and subsequently, was internalized by macrophages. Moreover, the CTHRSSVVC-phage targets atherosclerotic lesions of a low-density lipoprotein receptor knockout (LDLr^−/−) mouse model of atherosclerosis in vivo to High-Fat diet group versus Control group. Tetraazacyclododecane-1,4,7,10-tetraacetic acid-CTHRSSVVC peptide (DOTA-CTHRSSVVC) was synthesized and labeled with ¹¹¹InCl₃ in >95% yield as determined by high performance liquid chromatography (HPLC), to validate the binding of the peptide in atherosclerotic plaque specimens. The results supported our hypothesis that CTHRSSVVC peptide has a remarkable sequence for the development of theranostics approaches in the treatment of atherosclerosis and other diseases.     

Parameter Estimation of Fouling Models in Crude Preheat Trains

Several fouling mitigation techniques depend on the capacity of predicting fouling rates. Therefore, the identification of accurate fouling rate models is an important task. Crude fouling rates are usually evaluated through empirical or semiempirical models. In both alternatives, there are parameters that must be determined through laboratory or process data. In this context, the article presents an analysis of the parameter estimation problem involving fouling rate models. A proposed procedure for addressing this problem is described through the development of a computational routine called HEATMODEL. An important aspect of this study is focused on the obstacles associated to the search for the optimal set of parameters of the Ebert and Panchal models and its variants. This optimization problem may present some particularities that complicate the utilization of traditional algorithms. In the article, the performance of a conventional optimization algorithm (Simplex) is compared with a more modern numerical technique (a hybrid genetic algorithm) using real data from a Brazilian refinery. The results indicated that, due to the complexity of the parameter estimation problem, the Simplex method may be trapped in poor local optima, thus indicating the importance of the utilization of global optimization techniques for this problem.     

Influence of the matrix porosity on the synthesis and adsorption behavior of dithiocarbamate styrenic resins toward zinc(II) and cadmium(II) ions

The dependence of the adsorption behavior toward Zn²⁺ and Cd²⁺ on the synthesis conditions of dithiocarbamate styrenic resins was investigated. We synthesized styrene–divinylbenzene copolymers with different kinds of porous structures by varying the divinylbenzene (DVB)‐to‐styrene ratio and the dilution degree of the monomers with n‐heptane. The porous structure of these materials was characterized. The introduction of the dithiocarbamate moiety on the copolymers followed a synthetic pathway based on the nitration reaction, reduction of the nitro group to the amino one, and finally, the addition of the amino group to CS₂. All of the synthesis steps were monitored by Fourier transform infrared spectroscopy. Only the addition reaction to CS₂ was greatly influenced by the copolymer porosity. The effect of the dilution degree on the reaction extension was more pronounced than the effect of the DVB content. The more porous materials with higher dithiocarbamate contents adsorbed a higher amount of ions in a faster way, with Zn²⁺ being preferable over Cd²⁺ ions. The difference between the Zn²⁺ and Cd²⁺ adsorption rates was enhanced with the copolymer porosity, and also enhanced was the difference between the amounts of ions adsorbed by the copolymer; this suggested that the selectivity toward these ions could be controlled by the copolymer porous structure. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010     

Stakeholder perspectives on converting forest biomass to energy in Oregon, USA

Within the state of Oregon, USA, there is considerable interest in the possibility of converting forest biomass to energy. A number of studies have assessed the technical feasibility of forest biomass energy, but few have focused on social aspects, an important consideration in projects involving public forests. This study explores the social context of converting forest biomass to energy, using qualitative research methods. Semi-structured interviews were conducted with forty individuals representing nine different stakeholder groups. Information gained through interviews was used to understand stakeholder views on forest biomass energy, including their perspectives on potential barriers and opportunities in Oregon. Findings indicate the most challenging barrier will be access to long-term, consistent supply. A related challenge is the long history of contention between parties over forest products coming from public lands. However, findings also show that there are many areas of common ground between these groups that have historically been at odds, such as agreement on the necessity of restoration treatments in certain forest types, the by-product of which could be used for biomass generation. Potential conflicts still exist, for instance over projects in mixed conifer forests. Development of policies and projects through inclusive, collaborative approaches could alleviate controversies, potentially allowing more activities to move forward. Information provided by this research creates a foundation for discussions as forest biomass energy becomes an increasingly prominent issue in Oregon, the western USA, and other regions of the world.     

Study of Some Functional Properties of Casein: Effect of pH and Tryptic Hydrolysis

The trypsin was used to hydrolyze commercial casein at varied times and pH range. The functional properties studied were the emulsifying capacity (EC), the emulsifying activity index (EAI), and the emulsion stability (ES). The dispersed phase used was corn oil. The tryptic hydrolysis was beneficial to the solubility and EC of casein in practically all pH values and reaction times. In case of EAI, this same effect was less intense and was observed only in acid region (pH 3.0 to 5.0), while for ES the trypsin action was mainly deleterious in almost all pH range and reaction times.     

Stochastic particle packing with specified granulometry and porosity

This work presents a technique for particle size generation and placement in arbitrary closed domains. Its main application is the simulation of granular media described by disks. Particle size generation is based on the statistical analysis of granulometric curves which are used as empirical cumulative distribution functions to sample from mixtures of uniform distributions. The desired porosity is attained by selecting a certain number of particles, and their placement is performed by a stochastic point process. We present an application analyzing different types of sand and clay, where we model the grain size with the gamma, lognormal, Weibull and hyperbolic distributions. The parameters from the resulting best fit are used to generate samples from the theoretical distribution, which are used for filling a finite-size area with non-overlapping disks deployed by a Simple Sequential Inhibition stochastic point process. Such filled areas are relevant as plausible inputs for assessing Discrete Element Method and similar techniques.     

Morphological study on the reactivity of styrene‐divinylbenzene copolymers in a chloromethylation reaction

Styrene‐divinylbenzene (S‐DVB) copolymers with different kinds of porous structures were synthesized by aqueous suspension polymerization using n‐heptane as the pore forming agent. The amount of this solvent (monomer dilution degree) and the DVB content in the organic phase were varied. The combination of three different dilution degree values and three DVB contents yielded three series of copolymers with a variety of porous structures. The three series were composed by copolymers with pore diameters (D) in the following ranges: D < 500 Å, 500 < D < 1000 Å, and D > 1000 Å, respectively. The effect of synthesis conditions on the pore size distribution and on the copolymer matrix rigidity was evaluated. These copolymers were submitted to a chloromethylation reaction with a paraformaldehyde/gaseous HCl mixture in the presence of zinc chloride as a Lewis acid catalyst and 1,2‐dichloroethane as solvent. The effect of the copolymer porosity on the chloromethylation reaction extension was evaluated. It was possible to observe that a gel copolymer with a high swelling capacity in the reaction medium achieved the same chloromethylation yield observed for a high porous copolymer. This result thus indicates that, in the case of the chloromethylation reaction studied here, the high swelling capacity of the gel copolymer can counterbalance its limited surface area, turning this type of polymer structure as reactive as a macroporous one. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010     

Kinetic study of polyurethane synthesis using different catalytic systems of Fe,Cu, Sn,and Cr

This work presents a comparative study between alternative catalytic systems, metal‐β‐diketones complexes (iron, copper, chromium, and tin), and the commercial catalyst dibutyltin dilaurate, DBTDL, in the polyurethanes synthesis obtained from isophorone diisocyanate (IPDI) and polyols as polypropyleneglycol/diethyleneglycol and 1,6‐hexanodiol polyadipate (polyester A‐Mn = 2000 g/mol and polyester B‐Mn = 1000 g/mol) reactions. The polyurethanes synthesis was followed by the IPDI consumption in time, verified by infrared spectroscopy (FTIR) through the decrease of free NCO characteristic band at 2300–2200 cm^?1. The FTIR data was used to determine the polyurethanes formation kinetic behavior. It was verified that for the reactions with polyethers excess, DBTDL catalyst was more effective when compared to metal‐β‐diketones complexes, while for the reactions with polyester, A and B, the metal‐β‐diketones complexes were more effective. © 2009 Wiley Periodicals, Inc. JAppl Polym Sci, 2010