High hydrostatic pressure and UV light treatment of produce contaminated with Eimeria acervulina as a Cyclospora cayetanensis surrogate

The prevalence, size, genome, and life cycle of Eimeria acervulina make this organism a good surrogate for Cyclospora cayetanensis, a protozoan that causes gastroenteritis in humans, including recent outbreaks in the United States and Canada associated with contaminated raspberries and basil. Laboratory studies of C. cayetanensis are difficult because of the lack of readily available oocysts and of infection models and assays. UV radiation and high-hydrostatic-pressure processing (HPP) are both safe technologies with potential for use on fresh produce. Raspberries and basil were inoculated with sporulated E. acervulina oocysts at high (10(6) oocysts) and low (10(4) oocysts) levels, and inoculated and control produce were treated with UV (up to 261 mW/cm2) or HPP (550 MPa at 40 degrees C for 2 min). Oocysts recovered from produce were fed to 3-week-old broiler chickens, which were scored for weight gain, oocyst shedding, and lesions at 6 days postinoculation. Oocysts exhibited enhanced excystation on raspberries but not on basil. Birds fed oocysts from UV-treated raspberries had reduced infection rates, which varied with oocyst inoculum level and UV intensity. Birds fed oocysts from UV-treated raspberries (10(4) oocysts) were asymptomatic but shed oocysts, and birds fed oocysts from UV-treated basil (10(4) oocysts) were asymptomatic and did not shed oocysts. Birds fed oocysts from HPP-treated raspberries and basil were asymptomatic and did not shed oocysts. These results suggest that UV radiation and HPP may be used to reduce the risk for cyclosporiasis infection associated with produce. Both treatments yielded healthy animals; however, HPP was more effective, as indicated by results for produce with higher contamination levels.     

Studying protein folding on the Grid: experiences using CHARMM on NPACI resources under Legion

One benefit of a computational Grid is the ability to run high‐performance applications over distributed resources simply and securely. We demonstrated this benefit with an experiment in which we studied the protein‐folding process with the CHARMM molecular simulation package over a Grid managed by Legion, a Grid operating system. High‐performance applications can take advantage of Grid resources if the Grid operating system provides both low‐level functionality as well as high‐level services. We describe the nature of services provided by Legion for high‐performance applications. Our experiences indicate that human factors continue to play a crucial role in the configuration of Grid resources, underlying resources can be problematic, Grid services must tolerate underlying problems or inform the user, and high‐level services must continue to evolve to meet user requirements. Our experiment not only helped a scientist perform an important study, but also showed the viability of an integrated approach such as Legion's for managing a Grid. Copyright © 2004 John Wiley & Sons, Ltd.     

Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS

A new algorithm, sequence-specific retention calculator, was developed to predict retention time of tryptic peptides during RP HPLC fractionation on C18, 300-A pore size columns. Correlations of up to approximately 0.98 R2 value were obtained for a test library of approximately 2000 peptides and approximately 0.95-0.97 for a variety of real samples. The algorithm was applied in conjunction with an exclusion protocol based on mass (15 ppm tolerance) and retention time (2-min tolerance for 0.66% acetonitrile/min gradient), MART criteria to significantly reduce the instrument time required for complete MS/MS analysis of a digest separated by RP HPLC. This was confirmed by reanalyzing the set of HPLC-MALDI MS/MS data with no loss in protein identifications, despite the number of virtually executed MS/MS analyses being decreased by 57%.     

Metal catalyst residues in carbon nanotubes decrease the thermal stability of carbon nanotube/silicone composites

An anomalous decrease in the thermal stability of silicone was observed when carbon nanotubes (CNTs) were added as fillers. The decreased thermal stability is found to result from the residues of cobalt nanoparticles in CNTs, whereas CNTs synthesized with other metal catalysts do not show such a phenomenon. The analysis of thermal degradation products indicates that CNT fillers do not change the mechanism of the thermal degradation of silicone but cobalt nanoparticles within CNTs may accelerate the degradation through free radical generation. Radical scavengers such as hindered amines and impurity-free CNTs, or removal of cobalt nanoparticles by acid treatment, can mitigate the accelerated thermal degradation.     

Integration of LEFM and Strength Criteria for the Prediction of Notched Strength of Polymeric Composites

The prediction of the notched strength of polymeric composites has been the object of much interest in recent years. Theories based on both linear elastic fracture mechanics (LEFM) and strength criteria have been proposed by numerous investigators. In the present paper a model that integrates the concepts of a general strength criterion with the energy concept of LEFM is presented. This enables the transition between the extremes of both theories. Predictions made by the model are shown to compare well with experimental data for center-slit specimens of a variety of material systems. The use of the proposed model in ranking materials on the basis of notch sensitivity is also shown.     

Development of a General Ability Index for the Wechsler Adult Intelligence Scale—Third Edition.

The Wechsler Adult Intelligence Scale-Third Edition (WAIS-III; D. Wechsler, 1997) permits the calculation of both traditional IQ and index scores. However, if only the subtests constituting the index scores are administered, especially those yielding the Verbal Comprehension and Perceptual Organization Indexes, there is no equivalent measure of Full Scale IQ. Following the procedure for calculating a General Ability Index (GAI; A. Prifitera, L. G. Weiss, & D. H. Saklofske, 1998) for the Wechsler Intelligence Scale for Children - IIIrd Edition (WISC--III) (D. Wechsler, 1991), GAI normative tables for the WAIS-III standardization sample are reported here. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Trace element and Sigma DDT concentrations in horticultural soils from the Tasman, Waikato and Auckland regions of New Zealand

The long-term routine use of agrichemicals can result in elevated levels of trace elements and persistent organic pollutants in soils. Trace element concentrations and SigmaDDT levels were measured in soil (0-7.5 cm) samples collected from horticultural and grazing properties in 3 regions of New Zealand (Auckland, Tasman and Waikato). Elevated levels of arsenic (<2 to 58 mg kg(-1)), cadmium (<0.1 to 1.5 mg kg(-1)), copper (5 to 523 mg kg(-1)), lead (5 to 243 mg kg(-1)) and SigmaDDT (<0.03 to 34.5 mg kg(-1)) were detected in soils from all 3 regions. With the exception of cadmium and zinc, significantly higher levels of contaminants were generally detected in horticultural soils than in grazing soils. Our results have implications for the on-going use of agrichemicals as concentrations of cadmium, copper, tin and zinc in some samples exceeded ecotoxicity based soil criteria. The p,p'-DDE:DDT ratios indicate that the degradation of DDT in NZ horticultural soils may be inhibited by the co-contamination with trace elements.     

Geomorphic comparison of two Atlantic coastal rivers: Toward an understanding of physical controls on Atlantic salmon habitat

River channel substrate size and mobility are important to Atlantic salmon spawning and rearing success. We compare morphology and bed sediment between two North American Atlantic coastal streams (Narraguagus River, Maine, USA and Jacquet River, New Brunswick, Canada). The watersheds have similar drainage areas and mean annual precipitation, but differing relief structure, channel longitudinal profiles and numbers of returning salmon. The lower‐relief Narraguagus River is segmented into steeper (gradient >0.002) and flatter reaches (gradient <0.0005). Flat reaches, including mainstem lakes, act as sediment sinks, preventing the continuity of downstream sediment transport. Based on field measurements, the Narraguagus River has a larger high‐flow width to depth ratio than the Jacquet River, but this difference is principally the result of outliers from low‐gradient channel reaches. Measurements of substrate grain size reveal finer river‐bed sediments on the Narraguagus River, however, Shields parameter calculations indicate that bed sediment should be mobile during high flows in both streams. We use the Shields equation to predict grain size based on channel slope, width and drainage area measured from digital elevation models (DEM) and aerial photographs. Predictions of median grain size agree with field measurements within a factor of 2 for 62–70% of the survey stations. We suggest ways that model misfits may provide opportunities to prioritize reach‐based restoration efforts. Based on expected grain size, we estimate 62% spawning and 68% rearing habitat along the length of the Narraguagus River, and 28 and 95% respectively on the Jacquet. Overall, glacial history and relief structure appear to be the first‐order controls on substrate grain size and habitat quality in these two rivers. Copyright © 2010 John Wiley & Sons, Ltd.     

Fracture resistance via topology optimization

The fracture resistance of structures is optimized using the level-set method. Fracture resistance is assumed to be related to the elastic energy released by a crack propagating in a normal direction from parts of the boundary that are in tension, and is calculated using the virtual crack extension technique. The shape derivative of the fracture-resistance objective function is derived. Two illustrative two-dimensional case studies are presented: a hole in a plate subjected to biaxial strain; and a bridge fixed at both ends subjected to a single load in which the compliance and fracture resistance are jointly optimized. The structures obtained have rounded corners and more material at places where they are in tension. Based on the results, we propose that fracture resistance may be modeled more easily but less directly by including a term proportional to surface area in the objective function, in conjunction with nonlinear elasticity where the Young’s modulus in tension is lower than in compression.