Effects of systematic partial volume errors on the estimation of gray matter cerebral blood flow with arterial spin labeling MRI

Objective

Partial volume (PV) correction is an important step in arterial spin labeling (ASL) MRI that is used to separate perfusion from structural effects when computing the mean gray matter (GM) perfusion. There are three main methods for performing this correction: (1) GM-threshold, which includes only voxels with GM volume above a preset threshold; (2) GM-weighted, which uses voxel-wise GM contribution combined with thresholding; and (3) PVC, which applies a spatial linear regression algorithm to estimate the flow contribution of each tissue at a given voxel. In all cases, GM volume is obtained using PV maps extracted from the segmentation of the T1-weighted (T1w) image. As such, PV maps contain errors due to the difference in readout type and spatial resolution between ASL and T1w images. Here, we estimated these errors and evaluated their effect on the performance of each PV correction method in computing GM cerebral blood flow (CBF).

Materials and methods

Twenty-two volunteers underwent scanning using 2D echo planar imaging (EPI) and 3D spiral ASL. For each PV correction method, GM CBF was computed using PV maps simulated to contain estimated errors due to spatial resolution mismatch and geometric distortions which are caused by the mismatch in readout between ASL and T1w images. Results were analyzed to assess the effect of each error on the estimation of GM CBF from ASL data.

Results

Geometric distortion had the largest effect on the 2D EPI data, whereas the 3D spiral was most affected by the resolution mismatch. The PVC method outperformed the GM-threshold even in the presence of combined errors from resolution mismatch and geometric distortions. The quantitative advantage of PVC was 16% without and 10% with the combined errors for both 2D and 3D ASL. Consistent with theoretical expectations, for error-free PV maps, the PVC method extracted the true GM CBF. In contrast, GM-weighted overestimated GM CBF by 5%, while GM-threshold underestimated it by 16%. The presence of PV map errors decreased the calculated GM CBF for all methods.

Conclusion

The quality of PV maps presents no argument for the preferential use of the GM-threshold method over PVC in the clinical application of ASL.

     

Preparation of CaCO3‐based biomineralized polyvinylpyrrolidone–carboxymethylcellulose hydrogels and their viscoelastic behavior

In the blend of natural and synthetic polymer‐based biomaterial of polyvinylpyrrolidone (PVP) and carboxymethylcellulose (CMC), fabrication of CaCO₃ was successfully accomplished using simple liquid diffusion technique. The present study emphasizes the biomimetic mineralization in PVP–CMC hydrogel, and furthermore, several properties of this regenerated and functionalized hydrogel membranes were investigated. The physical properties were studied and confirmed the presence of CaCO₃ mineral in hydrogel by Fourier transform infrared spectroscopy and Scanning electron microscopy. Moreover, the absorptivity of water and mineral by PVP–CMC hydrogel was studied to determine its absorption capacity. Further, the viscoelastic properties (storage modulus, loss modulus, and complex viscosity) of mineralized and swelled samples (time: 5–150 min) were measured against angular frequency. It is interesting to know the increase of elastic nature of mineralized hydrogel filled with CaCO₃ maintaining the correlation between elastic property and viscous one of pure hydrogel. All these properties of biomineralized hydrogel suggest its application in biomedical field, like bone treatment, bone tissue regeneration, dental plaque and tissue replacement, etc. © 2013 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2014 , 131, 40237.     

Nanocomposites of SnO2 and g-C3N4: Preparation,characterization and photocatalysis under visible LED irradiation

Tin dioxide nanoparticles were prepared in the presence of graphitized carbon nitride (g-C₃N₄) forming nanocomposites with different contents of SnO₂ up to 40 %. G-C₃N₄ was synthetized by heating of melamine at 550 °C in the open air and Sn²⁺ ions were precipitated by sodium hydroxide in g-C₃N₄ aqueous dispersions. Resulting mixtures were dried by freezing at ?20 °C and calcined at 450 °C to obtain SnO₂/g-C₃N₄ nanocomposites.The nanocomposites were characterized by common characterization methods in solid state and in their aqueous dispersions using dynamic light scattering (DLS) analysis and photocatalysis. SnO₂ nanoparticles in the nanocomposites were found to have an average size of 4 nm, however, those precipitated without g-C₃N₄ had an average size of 14 nm. Separation of photoinduced electron and holes via heterojunction between SnO₂ and g-C₃N₄ was demonstrated by photocatalytic decomposition of Rhodamine B (RhB) under LED visible irradiation (416 nm) and photocurrent measurements. The most photocatalytically active nanocomposite contained 10 % of SnO₂. Graphitized carbon nitride was assumed to serve as a template structure for the preparation of SnO₂ nanoparticles with a narrow size distribution without using any stabilizing additives.     

Polyamic acid: nanoprecipitation and electrophoretic deposition on porous supports

Polyamic acid (PAA, a precursor of polyimide) was synthesized from 4,4′-oxydiphthalic anhydride and 4,4′-oxydianiline. PAA, dissolved in dimethylsulfoxide (DMSO), was precipitated into colloidal particles after its injection into acetone. The resulting particle size distribution was found to depend on aging time of PAA solutions, their concentration, and the manner in which the solutions were mixed with acetone. PAA particles of any size down to 10 nm appeared to be achievable by decreasing the acetone/DMSO ratio. Particles in DMSO/acetone suspensions were found to have a significant negative zeta potential. Therefore, there was no need to add organic bases to form PAA anions, in contrast to all previously published studies on the PAA electrodeposition. EPD was performed onto porous stainless-steel or alumina disks, which are suitable supports (reinforcements) for membranes. The slow evaporation of DMSO residue yielded dried polymer layers, comprised of 50–100 nm PAA globules. The outer surface of layers was usually covered with a very thin, continuous PAA skin. Such supported PAA layers—after a simple imidization step via a heat treatment—could be applied as thermally resistant membranes for gas separation.     

G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story

G-quadruplexes have long been perceived as rare and physiologically unimportant nucleic acid structures. However, several studies have revealed their importance in molecular processes, suggesting their possible role in replication and gene expression regulation. Pathways involving G-quadruplexes are intensively studied, especially in the context of human diseases, while their involvement in gene expression regulation in plants remains largely unexplored. Here, we conducted a bioinformatic study and performed a complex circular dichroism measurement to identify a stable G-quadruplex in the gene RPB1, coding for the RNA polymerase II large subunit. We found that this G-quadruplex-forming locus is highly evolutionarily conserved amongst plants sensu lato (Archaeplastida) that share a common ancestor more than one billion years old. Finally, we discussed a new hypothesis regarding G-quadruplexes interacting with UV light in plants to potentially form an additional layer of the regulatory network.     

Comparative Metabolomic Study of Drosophila Species with Different Lifespans

The increase in life expectancy, leading to a rise in the proportion of older people, is accompanied by a prevalence of age-related disorders among the world population, the fight against which today is one of the leading biomedical challenges. Exploring the biological insights concerning the lifespan is one of the ways to provide a background for designing an effective treatment for the increase in healthy years of life. Untargeted direct injection mass spectrometry-based metabolite profiling of 12 species of Drosophila with significant variations in natural lifespans was conducted in this research. A cross-comparison study of metabolomic profiles revealed lifespan signatures of flies. These signatures indicate that lifespan extension is associated with the upregulation of amino acids, phospholipids, and carbohydrate metabolism. Such information provides a metabolome-level view on longevity and may provide a molecular measure of organism age in age-related studies.     

Determination of compounding formulation of cured rubber by reverse engineering

The present work deals with reverse engineering on four rubber formulations. Information about the material composition of the compounding formulations was obtained by using techniques such as acetone extract, thermogravimetric analysis, energy dispersive X‐ray fluorescence studies, and Fourier transform infrared (FTIR) spectroscopy in attenuated total reflection mode. The reverse engineered formulations were compared on a qualitative and quantitative basis with the initial formulations. The aim was to ascertain the validity of the methodology, which may be used as reverse engineering of rubber compounds to quantitatively analyze unknown ground tire rubber in future. The state of the art was based on a fractional mass transfer from acetone extract to the rubbers detected in TGA. Through this new approach, the formulations calculated were very consistent with the formulations employed, thus establishing the validity of the methodology used. POLYM. ENG. SCI., 55:1450–1458, 2015. © 2015 Society of Plastics Engineers     

A Novel Nanoprobe for Multimodal Imaging Is Effectively Incorporated into Human Melanoma Metastatic Cell Lines

To facilitate efficient drug delivery to tumor tissue, several nanomaterials have been designed, with combined diagnostic and therapeutic properties. In this work, we carried out fundamental in vitro and in vivo experiments to assess the labeling efficacy of our novel theranostic nanoprobe, consisting of glycogen conjugated with a red fluorescent probe and gadolinium. Microscopy and resazurin viability assays were used to study cell labeling and cell viability in human metastatic melanoma cell lines. Fluorescence lifetime correlation spectroscopy (FLCS) was done to investigate nanoprobe stability. Magnetic resonance imaging (MRI) was performed to study T₁ relaxivity in vitro, and contrast enhancement in a subcutaneous in vivo tumor model. Efficient cell labeling was demonstrated, while cell viability, cell migration, and cell growth was not affected. FLCS showed that the nanoprobe did not degrade in blood plasma. MRI demonstrated that down to 750 cells/μL of labeled cells in agar phantoms could be detected. In vivo MRI showed that contrast enhancement in tumors was comparable between Omniscan contrast agent and the nanoprobe. In conclusion, we demonstrate for the first time that a non-toxic glycogen-based nanoprobe may effectively visualize tumor cells and tissue, and, in future experiments, we will investigate its therapeutic potential by conjugating therapeutic compounds to the nanoprobe.     

Cancer Cell Response to Anthracyclines Effects: Mysteries of the Hidden Proteins Associated with These Drugs

A comprehensive proteome map of T-lymphoblastic leukemia cells and its alterations after daunorubicin, doxorubicin and mitoxantrone treatments was monitored and evaluated either by paired comparison with relevant untreated control and using multivariate classification of treated and untreated samples. With the main focus on early time intervals when the influence of apoptosis is minimized, we found significantly different levels of proteins, which corresponded to 1%–2% of the total amount of protein spots detected. According to Gene Ontology classification of biological processes, the highest representation of identified proteins for all three drugs belong to metabolic processes of proteins and nucleic acids and cellular processes, mainly cytoskeleton organisation and ubiquitin-proteasome pathway. Importantly, we observed significant proportion of changes in proteins involved in the generation of precursor metabolites and energy typical for daunorubicin, transport proteins participating in response to doxorubicin and a group of proteins of immune system characterising response to mitoxantrone. Both a paired comparison and the multivariate evaluation of quantitative data revealed daunorubicin as a distinct member of the group of anthracycline/anthracenedione drugs. A combination of identified drug specific protein changes, which may help to explain anti-cancer activity, together with the benefit of blocking activation of adaptive cancer pathways, presents important approaches to improving treatment outcomes in cancer.