Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics

Purpose : We aimed to identify novel chemotherapy responsiveness biomarkers for osteosarcoma (OS) by investigating the global protein expression profile of 12 biopsy samples from OS patients. Experimental design : Six patients were classified as good responders and six as poor responders, according to the Huvos grading system. The protein expression profiles obtained by 2‐D DIGE consisted of 2250 protein spots. Results : Among them, we identified 55 protein spots whose intensity was significantly different (Bonferroni adjusted p‐value<0.01) between the two patient groups. Mass spectrometric protein identification demonstrated that the 55 spots corresponded to 38 distinct gene products including peroxiredoxin 2 (PRDX 2). Use of a specific antibody against PRDX 2 confirmed the differential expression of PRDX 2 between good and poor responders, while PRDX 2 levels as measured by Western blotting correlated highly with their corresponding 2‐D DIGE values. The predictive value of PRDX 2 expression was further confirmed by examining an additional four OS cases using Western blotting. Conclusions and clinical relevance : These results establish PRDX 2 as a candidate for chemotherapy responsiveness marker in OS. Measuring PRDX 2 in biopsy samples before treatment may contribute to more effective management of OS.     

Bayesian inference explains perception of unity and ventriloquism aftereffect: identification of common sources of audiovisual stimuli

We study a computational model of audiovisual integration by setting a Bayesian observer that localizes visual and auditory stimuli without presuming the binding of audiovisual information. The observer adopts the maximum a posteriori approach to estimate the physically delivered position or timing of presented stimuli, simultaneously judging whether they are from the same source or not. Several experimental results on the perception of spatial unity and the ventriloquism effect can be explained comprehensively if the subjects in the experiments are regarded as Bayesian observers who try to accurately locate the stimulus. Moreover, by adaptively changing the inner representation of the Bayesian observer in terms of experience, we show that our model reproduces perceived spatial frame shifts due to the audiovisual adaptation known as the ventriloquism aftereffect.     

Parametric Studies on the Behavior of Reinforced Soil Retaining Walls under Earthquake Loading

The finite element procedures are extremely useful in gaining insights into the behavior of reinforced soil retaining walls. In this study, a validated finite element procedure was used for conducting a series of parametric studies on the behavior of reinforced soil walls under construction and subject to earthquake loading. The procedure utilized a nonlinear numerical algorithms that incorporated a generalized plasticity soil model and a bounding surface geosynthetic model. The reinforcement layouts, soil properties under monotonic and cyclic loadings, block interaction properties, and earthquake motions were among major variables of investigation. The performance of the wall was presented for the facing deformation and crest surface settlement, lateral earth pressure, tensile force in the reinforcement layers, and acceleration amplification. The effects of soil properties, earthquake motions, and reinforcement layouts are issues of major design concern under earthquake loading. The deformation, reinforcement force, and earth pressure increased drastically under earthquake loading compared to end of construction.     

The Atmospheric Scanning Electron Microscope with open sample space observes dynamic phenomena in liquid or gas

Although conventional electron microscopy (EM) requires samples to be in vacuum, most chemical and physical reactions occur in liquid or gas. The Atmospheric Scanning Electron Microscope (ASEM) can observe dynamic phenomena in liquid or gas under atmospheric pressure in real time. An electron-permeable window made of pressure-resistant 100 nm-thick silicon nitride (SiN) film, set into the bottom of the open ASEM sample dish, allows an electron beam to be projected from underneath the sample. A detector positioned below captures backscattered electrons. Using the ASEM, we observed the radiation-induced self-organization process of particles, as well as phenomena accompanying volume change, including evaporation-induced crystallization. Using the electrochemical ASEM dish, we observed tree-like electrochemical depositions on the cathode. In silver nitrate solution, we observed silver depositions near the cathode forming incidental internal voids. The heated ASEM dish allowed observation of patterns of contrast in melting and solidifying solder. Finally, to demonstrate its applicability for monitoring and control of industrial processes, silver paste and solder paste were examined at high throughput. High resolution, imaging speed, flexibility, adaptability, and ease of use facilitate the observation of previously difficult-to-image phenomena, and make the ASEM applicable to various fields.     

Simulation of a chemical reaction, 2LiH→Li2+H2, driven by doubly excitation

A direct computer simulation of reaction dynamics at the electronic excited states is not easy to perform, because nonadiabatic equations must be solved as a function of time. Here we present a simple simulation to integrate directly the time-dependent Schrödinger equation within the framework of the time-dependent density functional theory (for electrons) coupled with the Newtonian equation of motion (for nuclei). We find that a chemical reaction, 2LiH→Li₂+H₂, takes place by the doubly excitation. Along the reaction, a level crossing occurs automatically between the highest occupied and lowest unoccupied levels. The simulation demonstrates a mechanism for relaxation for the reactions driven by doubly excitation: electronic excited state changes smoothly into the electronic ground state leaving a kinetic energy of the atoms.     

Modeling of Nonlinear Magnetizing Characteristics of Pole Transformer for Analyzing Islanding Prevention of Photovoltaic System

With increasing penetration of distributed generators such as photovoltaic (PV) systems in distribution systems, it is very important to quickly detect islanding caused by power system faults in order to assure electrical safety. We have developed a nonlinear magnetizing characteristics model of pole transformers for use in analyzing islanding prevention in PV systems. Basic experiments on the islanding detection were performed for verification of the proposed model. Analytical results obtained by the proposed model agreed well with experimental results.     

Effect of Shear Rate Distribution on Particle Aggregation in a Stirred Vessel

The modeling of particle aggregation under a simple shear flow and the extension of the model to a stirred vessel is described. The model quantitatively demonstrates the change of the number of aggregates with time for each shear rate. This number increased with higher shear rate and, conversely, the aggregate size became small when raising the shear rate. This was because aggregates were broken by the stronger shear force. The number of aggregates for different impellers was determined. The shear rate was back‐calculated from the experimentally obtained aggregate size and the model equation. This shear rate was different from that estimated from the Metzner‐Otto method, consequently, some revisions of the Metzner‐Otto equation might be necessary for its application to particle aggregation.