Emulation of complex open quantum systems using superconducting qubits

With quantum computers being out of reach for now, quantum simulators are alternative devices for efficient and accurate simulation of problems that are challenging to tackle using conventional computers. Quantum simulators are classified into analog and digital, with the possibility of constructing “hybrid” simulators by combining both techniques. Here we focus on analog quantum simulators of open quantum systems and address the limit that they can beat classical computers. In particular, as an example, we discuss simulation of the chlorosome light-harvesting antenna from green sulfur bacteria with over 250 phonon modes coupled to each electronic state. Furthermore, we propose physical setups that can be used to reproduce the quantum dynamics of a standard and multiple-mode Holstein model. The proposed scheme is based on currently available technology of superconducting circuits consist of flux qubits and quantum oscillators.     

Modeling the impact of spectral sensor configurations on the FLD retrieval accuracy of sun-induced chlorophyll fluorescence

Chlorophyll fluorescence is related to photosynthesis and can serve as a remote sensing proxy for estimating photosynthetic energy conversion and carbon uptake. Recent advances in sensor technology allow remote measurements of the sun-induced chlorophyll fluorescence signal (Fs) at leaf and canopy scale. The commonly used Fraunhofer Line Depth (FLD) principle exploits spectrally narrow atmospheric oxygen absorption bands and relates Fs to the difference of the absorption feature depth of a fluorescensing and a non-fluorescensing surface. However, due to the nature of these narrow bands, Fs retrieval results depend not only on vegetation species type or environmental conditions, but also on instrument technology and processing algorithms. Thus, an evaluation of all influencing factors and their separate quantification is required to further improve Fs retrieval and to allow a reproducible interpretation of Fs signals.Here we present a modeling study that isolates and quantifies the impacts of sensor characteristics, such as spectral sampling interval (SSI), spectral resolution (SR), signal to noise ratio (SNR), and spectral shift (SS) on the accuracy of Fs measurements in the oxygen A band centered at 760 nm (O₂-A). Modeled high resolution radiance spectra associated with known Fs were spectrally resampled, taking into consideration the various sensor properties. Fs was retrieved using the three most common FLD retrieval methods, namely the original FLD method (sFLD), the modified FLD (3FLD) and the improved FLD (iFLD). The analysis investigates parameter ranges, which are representative for field and airborne instruments currently used in Fs research (e.g., ASD FieldSpec, OceanOptics HR, AirFLEX, AISA, APEX, CASI, and MERIS).Our results show that the most important parameter affecting the retrieval accuracy is SNR, SR accounts for ≤ 40% of the error, the SSI for ≤ 12%, and SS for ≤ 7% of the error. A trade-off study revealed that high SR can partly compensate for low SNR. There is a strong interrelation between all parameters and the impact of specific parameters can compensate or amplify the influence of others. Hence, the combination of all parameters must be considered by the evaluation of sensors and their potential for Fs retrieval. In general, the standard FLD method strongly overestimates Fs, while 3FLD and iFLD provide a more accurate estimation of Fs. We conclude that technical sensor specifications and the retrieval methods cause a significant variability in retrieved Fs signals. Results are intended to be one relevant component of the total uncertainty budget of Fs retrieval and have to be considered in the interpretation of retrieved Fs signals.     

MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets

Investigations of molecular interactions can benefit from knowledge of the regions that correspond to binding sites and electrostatic potentials across molecular surfaces. In support of simulations aimed at a coarser level of granularity than molecular dynamics, we have developed MoSuMo, a SADI-based Semantic Web service for generating molecular surfaces from a set of 3D atomic coordinates. MoSuMo's service input requires a Protein Data Bank (PDB) identifier from which it obtains the PDB entry and for which it generates electrostatic potentials as vertex values across a geometric mesh that represents the molecular surface. Service inputs and outputs are specified as restrictions on classes from the Semanticscience Integrated Ontology (SIO), which is formalized using the Web Ontology Language (OWL). Binding sites containing their ligands are identified and described as sub-collections of surface vertices. Thus, MoSuMo provides a semantic web service for investigating molecular interactions including visualization.     

Computational versus psychophysical bottom-up image saliency: a comparative evaluation study

The predictions of 13 computational bottom-up saliency models and a newly introduced Multiscale Contrast Conspicuity(MCC) metric are compared with human visual conspicuity measurements. The agreement between human visual conspicuity estimates and model saliency predictions is quantified through their rank order correlation. The maximum of the computational saliency value over the target support area correlates most strongly with visual conspicuity for 12 of the 13 models. A simple multiscale contrast model and the MCC metric both yield the largest correlation with human visual target conspicuity (>0:84). Local image saliency largely determines human visual inspection and interpretation of static and dynamic scenes. Computational saliency models therefore have a wide range of important applications, like adaptive content delivery, region-of-interest-based image compression, video summarization, progressive image transmission, image segmentation, image quality assessment, object recognition, and content-aware image scaling. However, current bottom-up saliency models do not incorporate important visual effects like crowding and lateral interaction. Additional knowledge about the exact nature of the interactions between the mechanisms mediating human visual saliency is required to develop these models further. The MCC metric and its associated psychophysical saliency measurement procedure are useful tools to systematically investigate the relative contribution of different feature dimensions to overall visual target saliency.     

A study of 3D Network-on-Chip design for data parallel H.264 coding

In this paper, we implement, analyze and compare different Network-on-Chip (NoC) architectures aiming at higher efficiencies for MPEG-4/H.264 coding. Two-dimensional (2D) and three-dimensional (3D) NoCs based on Non-Uniform Cache Access (NUCA) are analyzed. We present results using a full system simulator with realistic workloads. Experiments show the average network latencies in two 3D NoCs are reduced by 28% and 34% respectively, comparing with 2D design. It is also shown that heat dissipation is a trade-off in improving performance of 3D chips. Our analysis and experiment results provide a guideline to design efficient 3D NoCs for data parallel H.264 coding applications.     

The State of the Art in Topology‐Based Visualization of Unsteady Flow

Vector fields are a common concept for the representation of many different kinds of flow phenomena in science and engineering. Methods based on vector field topology are known for their convenience for visualizing and analysing steady flows, but a counterpart for unsteady flows is still missing. However, a lot of good and relevant work aiming at such a solution is available. We give an overview of previous research leading towards topology‐based and topology‐inspired visualization of unsteady flow, pointing out the different approaches and methodologies involved as well as their relation to each other, taking classical (i.e. steady) vector field topology as our starting point. Particularly, we focus on Lagrangian methods, space–time domain approaches, local methods and stochastic and multifield approaches. Furthermore, we illustrate our review with practical examples for the different approaches.     

A model of cerebral cortex formation during fetal development using reaction-diffusion-convection equations with Turing space parameters

The cerebral cortex is a gray lamina formed by bodies of neurons covering the cerebral hemispheres, varying in thickness from 1.25 mm in the occipital lobe to 4 mm in the anterior lobe. The brain's surface is about 30 times greater that of the skull because of its many folds; such folds form the gyri, sulci and fissures and mark out areas having specific functions, divided into five lobes. Convolution formation may vary between individuals and is an important feature of brain formation; such patterns can be mathematically represented as Turing patterns. This article describes how a phenomenological model was developed by describing the formation pattern for the gyri occurring in the cerebral cortex by reaction diffusion equations with Turing space parameters. Numerical examples for simplified geometries of a brain were solved to study pattern formation. The finite element method was used for the numerical solution, in conjunction with the Newton–Raphson method. The numerical examples showed that the model can represent cerebral cortex fold formation and reproduce pathologies related to gyri formation, such as polymicrogyria and lissencephaly.     

A New Algorithm for Finding Trees with Many Leaves

We present an algorithm that finds out-trees and out-branchings with at least k leaves in directed graphs. These problems are known as Directed Maximum Leaf Out-Tree and Directed Maximum Leaf Out-Branching, respectively, and—in the case of undirected graphs—as Maximum Leaf Spanning Tree. The run time of our algorithm is O(4 ^k nm) on directed graphs and O(poly(n)+4 ^k k ²) on undirected graphs. This improves over the previously fastest algorithms for these problems with run times of 2 ^O(klog k) poly(n) and O(poly(n)+6.75 ^k poly(k)) respectively.     

Metaphors and Context-Aware Information Access

Metaphors are often used to provide the user with a mental model to ease the use of computers. An example of such a metaphor is the commonly used “Desktop Metaphor”. Metaphors also can be used to ease context-aware information access for the users of mobile information systems. In this paper we present a taxonomy that allows the categorisation of such metaphors. Furthermore, we give an overview of existing metaphors and their implementations. After introducing some new metaphors we conclude our considerations with a classification of new and existing metaphors using our taxonomy.     

MODEEP: a motion-based object detection and pose estimation method for airborne FLIR sequences

In this paper, we present a method called MODEEP (Motion-based Object DEtection and Estimation of Pose) to detect independently moving objects (IMOs) in forward-looking infrared (FLIR) image sequences taken from an airborne, moving platform. Ego-motion effects are removed through a robust multi-scale affine image registration process. Thereafter, areas with residual motion indicate potential object activity. These areas are detected, refined and selected using a Bayesian classifier. The resulting regions are clustered into pairs such that each pair represents one object's front and rear end. Using motion and scene knowledge, we estimate object pose and establish a region of interest (ROI) for each pair. Edge elements within each ROI are used to segment the convex cover containing the IMO. We show detailed results on real, complex, cluttered and noisy sequences. Moreover, we outline the integration of our fast and robust system into a comprehensive automatic target recognition (ATR) and action classification system.